Non-Coding RNA Search

Ss1.1-Pig3-SRG8019N05.3

Sequence:


               
               TGAGTGTGTGTGTGAGTGAGAGAGCGAGTGAGTGAGTGAGTGTGTGTGTGTGTGTGGAGA
TTCGGCTTGTTGTTGTCGGTGACTTCCCCCTCCCCTCCACCCCTCCCCCTTCCCCGCCGC
CGCTGCAGTGGCCGCTCCCTGGGCCGTAGGAAATGAGCGATAACGATGACATCGAGGTGG
AGAGCGACGCTGACAAACGGGCTCATCATAATGCACTGGAACGAAAACGTAGGGACCACA
TCAAAGACAGCTTTCACAGTTTGCGGGACTCAGTCCCATCACTCCAAGGAGAGAAGGCAT
CCCGGGCCCAAATCCTAGACAAAGCCACAGAGTATATCCAGTATATGCGAAGGAAAAACC
ACACACACCAGCAAGATATTGATGACCTCAAGCGGCAGAATGCTCTTCTGGAGCAGCAAG
TCCGTGCACTGGAGAAGGCGAGGTCGAGTGCCCAACTGCAGACCAACTACCCCTCCTCAG
ACAACAGCCTCTACACCAACGCCAAGGGCAGCACCATCTCTGCCTTCGATGGGGGCTCAG
ACTCCAGCTCGGAGTCGGAGCCCGAAAGAACGCCCAAAGCAGGAAGAATCCGGATGGAGG
CCAGCTAAGCTCCGCGGGGCAGGCCAGCAATAAAAACTGTCTGTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTGTGTGTGTGAGTGAGAGAGCGAGTGAGTGAGTGAGTGTGTGTGTGTGTGTGGAGA
TTCGGCTTGTTGTTGTCGGTGACTTCCCCCTCCCCTCCACCCCTCCCCCTTCCCCGCCGC
CGCTGCAGTGGCCGCTCCCTGGGCCGTAGGAAATGAGCGATAACGATGACATCGAGGTGG
AGAGCGACGCTGACAAACGGGCTCATCATAATGCACTGGAACGAAAACGTAGGGACCACA
TCAAAGACAGCTTTCACAGTTTGCGGGACTCAGTCCCATCACTCCAAGGAGAGAAGGCAT
CCCGGGCCCAAATCCTAGACAAAGCCACAGAGTATATCCAGTATATGCGAAGGAAAAACC
ACACACACCAGCAAGATATTGATGACCTCAAGCGGCAGAATGCTCTTCTGGAGCAGCAAG
TCCGTGCACTGGAGAAGGCGAGGTCGAGTGCCCAACTGCAGACCAACTACCCCTCCTCAG
ACAACAGCCTCTACACCAACGCCAAGGGCAGCACCATCTCTGCCTTCGATGGGGGCTCAG
ACTCCAGCTCGGAGTCGGAGCCCGAAAGAACGCCCAAAGCAGGAAGAATCCGGATGGAGG
CCAGCTAAGCTCCGCGGGGCAGGCCAGCAATAAAAACTGTCTGTCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|60835594|gb|AAX37146.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60835594|gb|AAX37146.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               459-648, - strand, RNAz p=0.96167

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               459-648, - strand, RNAz p=0.96167

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               419-648, gnl|bosTau2|chr10 (52512359-52512130)
               

               
               419-648, gnl|Hg17|chr14 (64613136-64612910)
               

               
               419-648, gnl|Mm7|chr12 (74897442-74897218)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               419-648, gnl|bosTau2|chr10 (52512359-52512130)
               

               
               419-648, gnl|Hg17|chr14 (64613136-64612910)
               

               
               419-648, gnl|Mm7|chr12 (74897442-74897218)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cte (0.29274)
               

               
               nje (0.16592)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               nje (0.16592)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	419-648, gnl\|bosTau2\|chr10 (52512359-52512130)
	419-648, gnl\|Hg17\|chr14 (64613136-64612910)
	419-648, gnl\|Mm7\|chr12 (74897442-74897218)

	cte (0.29274)
	nje (0.16592)
	clu (0.119646)
	ebs (0.118301)
	cty (0.10408)