Non-Coding RNA Search

Ss1.1-Pig3-SRG8019O11.3

Sequence:


               
               GGGGGAGGTTTCCAAACGGAGGGGGTCTGCCTTCGCCCTCCGCCGCATCTCATCCCATAT
GCTGTGCTCGCTTTGGGGGAATGGCGCGGAGGCATGATGTGGGATTTGGCCTGGATCCCG
ACGTGCCCTCCATCACCGCGGGGACCGCTGCCCTCATATCCCTGGCAAACATCACGATGC
TGATGAGTGGGGCCCAGTGGGTGGCCAGCACATGCTGGACAGTGACGCGCCTGGCCTCCC
TCACCTCCTGGGGCCTCCTCCCCTCCTCTCCCGCTCACCCGTTATCTCCACGGAGCTGCC
TGTCTGGGATCATTTGGGGACTTTTTTTCTGGGGGATAGTTCTTTTGCATGACCCCTCAT
GAGCAAGCCACACCCGCCTTTCTAGCTAGGTGTCCGCCGTGTGGCGCCGGCCGGCCACCC
TGCAGAGGGCCGGCTGCCCGCGGCGCTGGCCGGCCTTTCCTCTTCTCTCTTTTTGCTGAG
TTTCATTGTCTTTTCTTTCTGAGCCTTGTAAGTGTACAAAATTATTATTTTGTTCTGTCT
CGGGAAACTGCAAATAAAAGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGAGGTTTCCAAACGGAGGGGGTCTGCCTTCGCCCTCCGCCGCATCTCATCCCATAT
GCTGTGCTCGCTTTGGGGGAATGGCGCGGAGGCATGATGTGGGATTTGGCCTGGATCCCG
ACGTGCCCTCCATCACCGCGGGGACCGCTGCCCTCATATCCCTGGCAAACATCACGATGC
TGATGAGTGGGGCCCAGTGGGTGGCCAGCACATGCTGGACAGTGACGCGCCTGGCCTCCC
TCACCTCCTGGGGCCTCCTCCCCTCCTCTCCCGCTCACCCGTTATCTCCACGGAGCTGCC
TGTCTGGGATCATTTGGGGACTTTTTTTCTGGGGGATAGTTCTTTTGCATGACCCCTCAT
GAGCAAGCCACACCCGCCTTTCTAGCTAGGTGTCCGCCGTGTGGCGCCGGCCGGCCACCC
TGCAGAGGGCCGGCTGCCCGCGGCGCTGGCCGGCCTTTCCTCTTCTCTCTTTTTGCTGAG
TTTCATTGTCTTTTCTTTCTGAGCCTTGTAAGTGTACAAAATTATTATTTTGTTCTGTCT
CGGGAAACTGCAAATAAAAGGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               365-476, + strand, RNAz p=0.800465

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-476, + strand, RNAz p=0.800465

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               216-564, gnl|bosTau2|chr4 (39153697-39153342)
               

               
               216-564, gnl|Hg17|chr7 (44030369-44030003)
               

               
               216-564, gnl|Mm7|chr11 (5922028-5921649)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               216-564, gnl|bosTau2|chr4 (39153697-39153342)
               

               
               216-564, gnl|Hg17|chr7 (44030369-44030003)
               

               
               216-564, gnl|Mm7|chr11 (5922028-5921649)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

	216-564, gnl\|bosTau2\|chr4 (39153697-39153342)
	216-564, gnl\|Hg17\|chr7 (44030369-44030003)
	216-564, gnl\|Mm7\|chr11 (5922028-5921649)

	mas (0.210305)
	fcc (0.197785)
	col (0.195008)
	hyp (0.142837)
	ebs (0.118301)