Non-Coding RNA Search

Ss1.1-Pig3-SRG8019P07.3

Sequence:


               
               CAGGGCCCCTGAGTGACCCTATCACAGGCAAGCCCTACGTGCCCTTGTCTGAAGCTGAGG
AGCTGCGACTGAGTCATAACCTGCTGGAGCTGTGGCGACGGCGAGGGCCGGTCTGGCAGG
AAGCCCCCCAGCTCCCTGTGGACCCTCATCGGGACACTATCCTCAATGCCATCGAGCAGC
ACCCGGTGGTGGTCATTGCCGGTGACACGGGCTGTGGGAAAACCACGCGCATCCCCCAGC
TGCTGTTGGAGCGCTACGTGACCGAGGGCCGAGGCGCACGCTGCAACGTGATCATCACCC
AGCCGCGCCGCATCTCGGCTGTGTCCGTGGCACAGCGGGTCAGCCATGAACTGGGCCCCT
CCCTGCGCCGGAACGTGGGCTTCCAGGTGCGGTTGGAGAGCAAGCCTCCGGCGCGAGGTG
GGGCCCTGCTCTTCTGCACCGTGGGCATCCTGCTGCGGAAGCTGCAGAGCAACCCCAGCC
TGGAGGGTGTGAGCCACGTCATTGTGGATGAGGTGCACGAGCGGGACGTGAACACGGACT
TCCTGCTAATCCTGCTCAAGGGCCTGCAGCGGCTCAACCCAGCCCTGCGGCTGGTGCTCA
TGAGTGCCACCGGCGATAATGAGCGCTTTTCCCGCTACTTTGGTGGCTGCCCTGTCATCA
AGGTGCCCGGCTTCATGTACCCCGTTAAGGAGCACTACCTGGAGGACATCCTGGCCAAGC
TGGGCAAGCACCAGTACCCACACAGGCACCGGCACCATGAGTCTGAGGATGAATGTGCTC
TTGATTTGGACCTCGTCACTGATCTCGTTCTGCACATTGATGCCCGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGGCCCCTGAGTGACCCTATCACAGGCAAGCCCTACGTGCCCTTGTCTGAAGCTGAGG
AGCTGCGACTGAGTCATAACCTGCTGGAGCTGTGGCGACGGCGAGGGCCGGTCTGGCAGG
AAGCCCCCCAGCTCCCTGTGGACCCTCATCGGGACACTATCCTCAATGCCATCGAGCAGC
ACCCGGTGGTGGTCATTGCCGGTGACACGGGCTGTGGGAAAACCACGCGCATCCCCCAGC
TGCTGTTGGAGCGCTACGTGACCGAGGGCCGAGGCGCACGCTGCAACGTGATCATCACCC
AGCCGCGCCGCATCTCGGCTGTGTCCGTGGCACAGCGGGTCAGCCATGAACTGGGCCCCT
CCCTGCGCCGGAACGTGGGCTTCCAGGTGCGGTTGGAGAGCAAGCCTCCGGCGCGAGGTG
GGGCCCTGCTCTTCTGCACCGTGGGCATCCTGCTGCGGAAGCTGCAGAGCAACCCCAGCC
TGGAGGGTGTGAGCCACGTCATTGTGGATGAGGTGCACGAGCGGGACGTGAACACGGACT
TCCTGCTAATCCTGCTCAAGGGCCTGCAGCGGCTCAACCCAGCCCTGCGGCTGGTGCTCA
TGAGTGCCACCGGCGATAATGAGCGCTTTTCCCGCTACTTTGGTGGCTGCCCTGTCATCA
AGGTGCCCGGCTTCATGTACCCCGTTAAGGAGCACTACCTGGAGGACATCCTGGCCAAGC
TGGGCAAGCACCAGTACCCACACAGGCACCGGCACCATGAGTCTGAGGATGAATGTGCTC
TTGATTTGGACCTCGTCACTGATCTCGTTCTGCACATTGATGCCCGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55621976|ref|XP_517017.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55621976|ref|XP_517017.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               322-521, - strand, RNAz p=0.91225
               

               
               562-681, + strand, RNAz p=0.890965

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               322-521, - strand, RNAz p=0.91225
               

               
               562-681, + strand, RNAz p=0.890965

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC038417, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC038417, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-768, gnl|bosTau2|chr22 (40648944-40649708)
               

               
               3-768, gnl|Hg17|chr3 (47862737-47863501)
               

               
               3-768, gnl|Mm7|chr9 (109785047-109784283)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-768, gnl|bosTau2|chr22 (40648944-40649708)
               

               
               3-768, gnl|Hg17|chr3 (47862737-47863501)
               

               
               3-768, gnl|Mm7|chr9 (109785047-109784283)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.42061)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)

	322-521, - strand, RNAz p=0.91225
	562-681, + strand, RNAz p=0.890965

	3-768, gnl\|bosTau2\|chr22 (40648944-40649708)
	3-768, gnl\|Hg17\|chr3 (47862737-47863501)
	3-768, gnl\|Mm7\|chr9 (109785047-109784283)