Non-Coding RNA Search

Ss1.1-Pig3-SRG8020C16.5

Sequence:


               
               TGCCTGCTCATTTCAATGCATAAGGTAAATAGCCAGTGCTTTTCCATAATACATTCCAGT
ACTATGTAATAATAAATAGATTTCCCAAGCCACTTAATAAAAACACACGGTTATAATGTT
CAAGGCCTTCATTCATTTCCTCGCATGGGATAGGTTTTACTTAACCAGATACCTGAATTA
TTTTAATGTTTTGTCTAATTCATTTGTTGTAATTTCATAGGTTCAAATTTTTGGTTTGGC
TTGCAATGTAAATAATATTGTTCATTTGCTAGTTTAGCAGATTATACTCTGTAAATCAAT
ACTTTAAAAAAATCTAGTTGTCACAAACTTAAATTACGATGTCATCAAATAACACCAGGA
TATATACTAATATATCTGTAGGGCATGGTTAAATTGAATATATTTTGAAATGTCTAGTAT
TTTTTGTTTTTTAAAGATGAATGCATCTCTTAAACCTGTACCATTAATTTTAAAAGTTCA
ATTTGGTGTTTCATATTATATTTTAAGATATTTTTCTTTACCCAATACTATAAGTTTAGA
GAAACATTTTCTGATTGAAAAGATAACATATGCCTCATTTCAAGAATTTTAAGAATACTA
GTATGTATAAAAATATGTAAACACATATAAGATTATAAACTTCCATTCTATGTTTTGGCT
TTTCATGTAACACCACTTCTTACTCATTTGATTGTGCTTATTTGTAATTATTCTAAATCA
TGCACGATGTAAATAGTGTGGTTCATTATGCAAAATGTCGTTGTATTTACAGACTGCAGA
ACAAGGTAAATTTGTAAACTGAGTGATAAAAACTTGGGTTTCTTATAAAACAAAGTGGAA
ATAACAGTTGTGTGTTATATTTATGTAATTCATTACAAAACTGTTTATGCCATGCATTTA
TTTACCTTATAAGACTAAACTGTCACTTATAAAATATTTAAATCAATAAATGATACCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTGCTCATTTCAATGCATAAGGTAAATAGCCAGTGCTTTTCCATAATACATTCCAGT
ACTATGTAATAATAAATAGATTTCCCAAGCCACTTAATAAAAACACACGGTTATAATGTT
CAAGGCCTTCATTCATTTCCTCGCATGGGATAGGTTTTACTTAACCAGATACCTGAATTA
TTTTAATGTTTTGTCTAATTCATTTGTTGTAATTTCATAGGTTCAAATTTTTGGTTTGGC
TTGCAATGTAAATAATATTGTTCATTTGCTAGTTTAGCAGATTATACTCTGTAAATCAAT
ACTTTAAAAAAATCTAGTTGTCACAAACTTAAATTACGATGTCATCAAATAACACCAGGA
TATATACTAATATATCTGTAGGGCATGGTTAAATTGAATATATTTTGAAATGTCTAGTAT
TTTTTGTTTTTTAAAGATGAATGCATCTCTTAAACCTGTACCATTAATTTTAAAAGTTCA
ATTTGGTGTTTCATATTATATTTTAAGATATTTTTCTTTACCCAATACTATAAGTTTAGA
GAAACATTTTCTGATTGAAAAGATAACATATGCCTCATTTCAAGAATTTTAAGAATACTA
GTATGTATAAAAATATGTAAACACATATAAGATTATAAACTTCCATTCTATGTTTTGGCT
TTTCATGTAACACCACTTCTTACTCATTTGATTGTGCTTATTTGTAATTATTCTAAATCA
TGCACGATGTAAATAGTGTGGTTCATTATGCAAAATGTCGTTGTATTTACAGACTGCAGA
ACAAGGTAAATTTGTAAACTGAGTGATAAAAACTTGGGTTTCTTATAAAACAAAGTGGAA
ATAACAGTTGTGTGTTATATTTATGTAATTCATTACAAAACTGTTTATGCCATGCATTTA
TTTACCTTATAAGACTAAACTGTCACTTATAAAATATTTAAATCAATAAATGATACCAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               25-960, gnl|bosTau2|chr2 (53620869-53619930)
               

               
               25-960, gnl|Hg17|chr11 (106050905-106049960)
               

               
               25-960, gnl|Mm7|chr9 (3816028-3816925)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-960, gnl|bosTau2|chr2 (53620869-53619930)
               

               
               25-960, gnl|Hg17|chr11 (106050905-106049960)
               

               
               25-960, gnl|Mm7|chr9 (3816028-3816925)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               fbs (0.175346)
               

               
               spl (0.143184)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               fbs (0.175346)
               

               
               spl (0.143184)
               

               
               ret (0.128733)

	25-960, gnl\|bosTau2\|chr2 (53620869-53619930)
	25-960, gnl\|Hg17\|chr11 (106050905-106049960)
	25-960, gnl\|Mm7\|chr9 (3816028-3816925)

	fco (0.314416)
	bfe (0.299715)
	fbs (0.175346)
	spl (0.143184)
	ret (0.128733)