Ss1.1-Pig3-SRG8020D13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCGCAACCACCATATGGAGCGCATCGTTGAGTCCGAGCAGAAGGGCAAGGCAGCCCT GGCAGCCACATTGGAGGAGTTCAAAGCCACAGTTGCCACCGACCAGATCGAGATGAACCG CCTGAAGGCTCAGCTGGAGAATGAGAAGCAGAAAGTGGCGGAGCTGTATTCCATCCATAA CTCTGGAGATAAATCTGACATTCAGGATCTCCTGGAGAGTGTCAGGCTGGACAAAGAGAA AGCAGAGACTCTGGCCAGCAGCCTGCAGGAGGACCTGGCTCACACCCGGAATGATGCCAA TCGGCTACAGGACACCATCGCAAAGGTAGAAGATGAATACCGAGCCTTCCAGGAGGAAGC TAAGAAGCAGATAGAAGATTTGAATATGACATTAGAAAAGTTAAGATCAGAGCTGGAAGA GAAAGAGACAGAAAGGAGTGACATGAAAGAAACGATCTTTGAACTTGAAGACGAAGTGGA ACAGCACCGGGCAGTGAAGCTTCATGACAACCTCATCATCTCTGACTTAGAAAATACGGT TAAAAAACTCCAGGACCAAAAACATGACATGGAAAGAGAAATCAAGACACTCCACAGGAG ACTTCGGGAAGAGTCAGCGGAATGGCGGCAGTTTCAGGCTGATCTCCAGACTGCAGTGGT CATAGCAAATGACATTAAATCTGAAGCCCAAGAGGAGATTGGTGATCTGAAGCGCCGGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCGCAACCACCATATGGAGCGCATCGTTGAGTCCGAGCAGAAGGGCAAGGCAGCCCT GGCAGCCACATTGGAGGAGTTCAAAGCCACAGTTGCCACCGACCAGATCGAGATGAACCG CCTGAAGGCTCAGCTGGAGAATGAGAAGCAGAAAGTGGCGGAGCTGTATTCCATCCATAA CTCTGGAGATAAATCTGACATTCAGGATCTCCTGGAGAGTGTCAGGCTGGACAAAGAGAA AGCAGAGACTCTGGCCAGCAGCCTGCAGGAGGACCTGGCTCACACCCGGAATGATGCCAA TCGGCTACAGGACACCATCGCAAAGGTAGAAGATGAATACCGAGCCTTCCAGGAGGAAGC TAAGAAGCAGATAGAAGATTTGAATATGACATTAGAAAAGTTAAGATCAGAGCTGGAAGA GAAAGAGACAGAAAGGAGTGACATGAAAGAAACGATCTTTGAACTTGAAGACGAAGTGGA ACAGCACCGGGCAGTGAAGCTTCATGACAACCTCATCATCTCTGACTTAGAAAATACGGT TAAAAAACTCCAGGACCAAAAACATGACATGGAAAGAGAAATCAAGACACTCCACAGGAG ACTTCGGGAAGAGTCAGCGGAATGGCGGCAGTTTCAGGCTGATCTCCAGACTGCAGTGGT CATAGCAAATGACATTAAATCTGAAGCCCAAGAGGAGATTGGTGATCTGAAGCGCCGGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 120-239, + strand, RNAz p=0.74999 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 120-239, + strand, RNAz p=0.74999 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-328, gnl|bosTau2|chr17 (44958168-44957841) | |
| 1-328, gnl|Hg17|chr22 (23043116-23043443) | |
| 1-328, gnl|Mm7|chr10 (74902039-74902366) | |
| 607-720, gnl|bosTau2|chr17 (44944549-44944436) | |
| 607-720, gnl|canFam2|chr26 (31126993-31127192) | |
| 607-720, gnl|danRer3|chr8 (23501525-23501724) | |
| 607-720, gnl|dasNov1|scaffold_46537 (3613-3414) | |
| 607-720, gnl|echTel1|scaffold_255143 (4818-5010) | |
| 607-720, gnl|fr1|chrUn (56386753-56386559) | |
| 607-720, gnl|galGal2|chr15 (8484388-8484187) | |
| 607-720, gnl|hg17|chr22 (23050765-23050964) | |
| 607-720, gnl|Hg17|chr22 (23050777-23050890) | |
| 607-720, gnl|loxAfr1|scaffold_52728 (4127-3928) | |
| 607-720, gnl|mm7|chr10 (74914606-74914805) | |
| 607-720, gnl|Mm7|chr10 (74914618-74914731) | |
| 607-720, gnl|monDom2|scaffold_475 (7625-7822) | |
| 607-720, gnl|oryCun1|scaffold_126236 (4681-4879) | |
| 607-720, gnl|panTro1|chr23 (23105490-23105689) | |
| 607-720, gnl|rheMac2|chr10 (67745168-67745367) | |
| 607-720, gnl|rn3|chr20 (13898800-13898602) | |
| 607-720, gnl|tetNig1|chr12 (11554997-11554805) | |
| 607-720, gnl|xenTro1|scaffold_169 (522408-522606) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-328, gnl|bosTau2|chr17 (44958168-44957841) | |
| 1-328, gnl|Hg17|chr22 (23043116-23043443) | |
| 1-328, gnl|Mm7|chr10 (74902039-74902366) | |
| 607-720, gnl|bosTau2|chr17 (44944549-44944436) | |
| 607-720, gnl|canFam2|chr26 (31126993-31127192) | |
| 607-720, gnl|danRer3|chr8 (23501525-23501724) | |
| 607-720, gnl|dasNov1|scaffold_46537 (3613-3414) | |
| 607-720, gnl|echTel1|scaffold_255143 (4818-5010) | |
| 607-720, gnl|fr1|chrUn (56386753-56386559) | |
| 607-720, gnl|galGal2|chr15 (8484388-8484187) | |
| 607-720, gnl|hg17|chr22 (23050765-23050964) | |
| 607-720, gnl|Hg17|chr22 (23050777-23050890) | |
| 607-720, gnl|loxAfr1|scaffold_52728 (4127-3928) | |
| 607-720, gnl|mm7|chr10 (74914606-74914805) | |
| 607-720, gnl|Mm7|chr10 (74914618-74914731) | |
| 607-720, gnl|monDom2|scaffold_475 (7625-7822) | |
| 607-720, gnl|oryCun1|scaffold_126236 (4681-4879) | |
| 607-720, gnl|panTro1|chr23 (23105490-23105689) | |
| 607-720, gnl|rheMac2|chr10 (67745168-67745367) | |
| 607-720, gnl|rn3|chr20 (13898800-13898602) | |
| 607-720, gnl|tetNig1|chr12 (11554997-11554805) | |
| 607-720, gnl|xenTro1|scaffold_169 (522408-522606) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.195274) | |
| che (0.136314) | |
| spc (0.113366) |