Non-Coding RNA Search

Ss1.1-Pig3-SRG8020E06.3

Sequence:


               
               CCAGTTCCCCCCAGCGCATGGATCGGCTTTATGGGTTGGCTGACCAGATGGTGGCCCGGG
GCAACCTCGGAGTATATCAGGAGACAAGGGAACGACTGGCCATGCGGCTGAAAGGATTGG
GGTGCCGGACTCATGGAGCCCCTGACCCCACACCCCCACCGTCTCTGGACATGTTTGCTG
AGGAGGTGGCGGAGGCGGAGCTGGAGACCCCAACCCCTGCCCAGAAAGAAGAAGCAGAGT
CACCCGGAGATGGTTTGGCGGACGTGATGTGGGAATATAAATGGGAGAACACGGGGGATG
CTGAGCTGTACGGGCCTTTCAGCAGCACCCAGATGCAGACCTGGGTGAACGAAGGCTACT
TCCCAGATGGTGTTTATTGCCGGAAGCTCGACCCCCCCGGCGGACAGTTCTACAACTCCA
AACGGATTGACTTTGACCTCTACACCTGAGCCTACCGAGGACCCAGTTGGGGGCCCTGTT
TTTTTTGTTTGTTTTTTTTTTCCTGGACTCTGTGGAGGAGGCCCTGGCTGCCTCGGGCAA
TGAGGACATCAGGGGGCTGCTTTTCTTTTCAGTCAAGTTCCTTTTCCCAATAAAAGCTTT
TAGTTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGTTCCCCCCAGCGCATGGATCGGCTTTATGGGTTGGCTGACCAGATGGTGGCCCGGG
GCAACCTCGGAGTATATCAGGAGACAAGGGAACGACTGGCCATGCGGCTGAAAGGATTGG
GGTGCCGGACTCATGGAGCCCCTGACCCCACACCCCCACCGTCTCTGGACATGTTTGCTG
AGGAGGTGGCGGAGGCGGAGCTGGAGACCCCAACCCCTGCCCAGAAAGAAGAAGCAGAGT
CACCCGGAGATGGTTTGGCGGACGTGATGTGGGAATATAAATGGGAGAACACGGGGGATG
CTGAGCTGTACGGGCCTTTCAGCAGCACCCAGATGCAGACCTGGGTGAACGAAGGCTACT
TCCCAGATGGTGTTTATTGCCGGAAGCTCGACCCCCCCGGCGGACAGTTCTACAACTCCA
AACGGATTGACTTTGACCTCTACACCTGAGCCTACCGAGGACCCAGTTGGGGGCCCTGTT
TTTTTTGTTTGTTTTTTTTTTCCTGGACTCTGTGGAGGAGGCCCTGGCTGCCTCGGGCAA
TGAGGACATCAGGGGGCTGCTTTTCTTTTCAGTCAAGTTCCTTTTCCCAATAAAAGCTTT
TAGTTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27065275|pdb|1L2Z|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27065275|pdb|1L2Z|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-231, - strand, RNAz p=0.863494

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-231, - strand, RNAz p=0.863494

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-231, gnl|bosTau2|chr25 (24435033-24435263)
               

               
               1-231, gnl|Hg17|chr16 (30272420-30272190)
               

               
               1-231, gnl|Mm7|chr7 (123290991-123290761)
               


               
               334-608, gnl|bosTau2|chr25 (24435535-24435786)
               

               
               334-608, gnl|Hg17|chr16 (30271922-30271671)
               

               
               334-608, gnl|Mm7|chr7 (123290493-123290254)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-231, gnl|bosTau2|chr25 (24435033-24435263)
               

               
               1-231, gnl|Hg17|chr16 (30272420-30272190)
               

               
               1-231, gnl|Mm7|chr7 (123290991-123290761)
               


               
               334-608, gnl|bosTau2|chr25 (24435535-24435786)
               

               
               334-608, gnl|Hg17|chr16 (30271922-30271671)
               

               
               334-608, gnl|Mm7|chr7 (123290493-123290254)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               nbm (0.0993246)

	1-231, gnl\|bosTau2\|chr25 (24435033-24435263)
	1-231, gnl\|Hg17\|chr16 (30272420-30272190)
	1-231, gnl\|Mm7\|chr7 (123290991-123290761)

	334-608, gnl\|bosTau2\|chr25 (24435535-24435786)
	334-608, gnl\|Hg17\|chr16 (30271922-30271671)
	334-608, gnl\|Mm7\|chr7 (123290493-123290254)