Ss1.1-Pig3-SRG8020E21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGTGTCGTGCGCTGTGAGGGGACACCCGGAGACCAGTGACTCGGCTTCACTCAGTCGC CTTTCTCCCCCGTCTGTGTCCGCGCCGGACCCGGTGCCATCTCTTTATCCACGCTCCAGT GACACAAGATGCCCTTCAATGGCGAGAAGCATTGTGTGGGCGAAGACCAGCCGAGCGATT CAGACTCTTCCCGGTTTTCCGAAAGCATGGCTTCCCTCAGTGACTATGAGTGCTCCAGGC AGAGCTTTACAAGCGACTCCTCCAGCAAATCCAGCTCCCCTGCTTCAAAGCTGACAGAGA GCAGAGGCTGGGGGGTGGGCGTGGAGGTGGTTCTAGACATGCCTGTTGTATTTTAAAACT TAGAAATGAGTGAACATGAAGTACTAACTTCCCTTCTTTTCTAGATGTACCAGAATGGCA CTGCCAGGGCACTGCAGCTGTCTTGTACATGCGCTCAGCAGTAAATAGCCACCAACGTCT AACTGAATGCAGAGCCTCCCGAGTATGAGCATGCCATCAAACTGTTTGAAGAAATCAGAG AGATTCTTCTTTCTTTTCTGACTCCTGGTGGCAACCGGCTTCGCAACCAGATCTGTGAAG TTCTGGACACAGACCTTATCAGGCAGCATGCTGAGCACAGTGCTGTTGACATCCAAGGCC TGGCCAACTATGTCATCAGTACGATGGGAAAGCTGTGTGCTCCCGTGCGAGATGATGATA TCCGAGAGTTAAAGGCTACCGGCAACATTGTGGAGGTGCTAAGACAAATATTTCATGTCC TGGACCTGATGAAAATGGATATGGTCAATTTTACAATTAGAAGCCTGAGACCACATCTTC AACGCCAGTTGGTAGATTATGAGAGAACCAAGTTTCAAGAAATTTTAGAAGAAACTCCAA GTGCTCTTGATCAAACTACAGAATGGATCAAAGAATCTGTACATGAAGAATTGCTTTCTC TTTCTGAGGCTGCTCTAACTCCTGGGGCCGAAAACAGCTCCAAGCCAAGCATGAGCCCTA CATTGGTGCTAAATAACAGTTATTTGAAACTGTTACAGTGGGATTATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGTGTCGTGCGCTGTGAGGGGACACCCGGAGACCAGTGACTCGGCTTCACTCAGTCGC CTTTCTCCCCCGTCTGTGTCCGCGCCGGACCCGGTGCCATCTCTTTATCCACGCTCCAGT GACACAAGATGCCCTTCAATGGCGAGAAGCATTGTGTGGGCGAAGACCAGCCGAGCGATT CAGACTCTTCCCGGTTTTCCGAAAGCATGGCTTCCCTCAGTGACTATGAGTGCTCCAGGC AGAGCTTTACAAGCGACTCCTCCAGCAAATCCAGCTCCCCTGCTTCAAAGCTGACAGAGA GCAGAGGCTGGGGGGTGGGCGTGGAGGTGGTTCTAGACATGCCTGTTGTATTTTAAAACT TAGAAATGAGTGAACATGAAGTACTAACTTCCCTTCTTTTCTAGATGTACCAGAATGGCA CTGCCAGGGCACTGCAGCTGTCTTGTACATGCGCTCAGCAGTAAATAGCCACCAACGTCT AACTGAATGCAGAGCCTCCCGAGTATGAGCATGCCATCAAACTGTTTGAAGAAATCAGAG AGATTCTTCTTTCTTTTCTGACTCCTGGTGGCAACCGGCTTCGCAACCAGATCTGTGAAG TTCTGGACACAGACCTTATCAGGCAGCATGCTGAGCACAGTGCTGTTGACATCCAAGGCC TGGCCAACTATGTCATCAGTACGATGGGAAAGCTGTGTGCTCCCGTGCGAGATGATGATA TCCGAGAGTTAAAGGCTACCGGCAACATTGTGGAGGTGCTAAGACAAATATTTCATGTCC TGGACCTGATGAAAATGGATATGGTCAATTTTACAATTAGAAGCCTGAGACCACATCTTC AACGCCAGTTGGTAGATTATGAGAGAACCAAGTTTCAAGAAATTTTAGAAGAAACTCCAA GTGCTCTTGATCAAACTACAGAATGGATCAAAGAATCTGTACATGAAGAATTGCTTTCTC TTTCTGAGGCTGCTCTAACTCCTGGGGCCGAAAACAGCTCCAAGCCAAGCATGAGCCCTA CATTGGTGCTAAATAACAGTTATTTGAAACTGTTACAGTGGGATTATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 236-354, + strand, RNAz p=0.511683 | |
| 580-699, + strand, RNAz p=0.649565 | |
| 967-1068, + strand, RNAz p=0.507161 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 236-354, + strand, RNAz p=0.511683 | |
| 580-699, + strand, RNAz p=0.649565 | |
| 967-1068, + strand, RNAz p=0.507161 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 102-354, gnl|bosTau2|chr5 (42158858-42159108) | |
| 102-354, gnl|Hg17|chr12 (105207292-105207507) | |
| 367-472, gnl|bosTau2|chr5 (42159330-42159435) | |
| 367-472, gnl|canFam2|chr10 (35471792-35471674) | |
| 367-472, gnl|dasNov1|scaffold_268 (191503-191626) | |
| 367-472, gnl|echTel1|scaffold_323002 (44587-44738) | |
| 367-472, gnl|hg17|chr12 (105207512-105207650) | |
| 367-472, gnl|Hg17|chr12 (105207535-105207649) | |
| 367-472, gnl|loxAfr1|scaffold_41243 (14147-14295) | |
| 367-472, gnl|mm7|chr10 (84126452-84126587) | |
| 367-472, gnl|oryCun1|scaffold_172546 (58989-58841) | |
| 367-472, gnl|panTro1|chr10 (107719632-107719774) | |
| 367-472, gnl|rheMac2|chr11 (107406991-107407133) | |
| 367-472, gnl|rn3|chr7 (21326172-21326035) | |
| 541-763, gnl|bosTau2|chr5 (42168896-42169118) | |
| 541-763, gnl|canFam2|chr10 (35464135-35463865) | |
| 541-763, gnl|danRer3|chr4 (18296378-18296618) | |
| 541-763, gnl|dasNov1|scaffold_268 (199230-199500) | |
| 541-763, gnl|echTel1|scaffold_45881 (951-684) | |
| 541-763, gnl|fr1|chrUn (90838752-90838478) | |
| 541-763, gnl|galGal2|chr1 (50601876-50601621) | |
| 541-763, gnl|hg17|chr12 (105217716-105217982) | |
| 541-763, gnl|Hg17|chr12 (105217729-105217951) | |
| 541-763, gnl|loxAfr1|scaffold_2210 (96313-96086) | |
| 541-763, gnl|mm7|chr10 (84132435-84132702) | |
| 541-763, gnl|Mm7|chr10 (84132450-84132672) | |
| 541-763, gnl|monDom2|scaffold_34 (7029197-7028950) | |
| 541-763, gnl|oryCun1|scaffold_172546 (48938-48669) | |
| 541-763, gnl|panTro1|chr10 (107729635-107729901) | |
| 541-763, gnl|rheMac2|chr11 (107416938-107417204) | |
| 541-763, gnl|rn3|chr7 (21320386-21320119) | |
| 541-763, gnl|tetNig1|chrUn_random (91024622-91024857) | |
| 541-763, gnl|xenTro1|scaffold_230 (895773-896023) | |
| 898-1068, gnl|bosTau2|chr5 (42177958-42178128) | |
| 898-1068, gnl|canFam2|chr10 (35452582-35452355) | |
| 898-1068, gnl|danRer3|chr4 (18299232-18299452) | |
| 898-1068, gnl|dasNov1|scaffold_268 (223058-223284) | |
| 898-1068, gnl|echTel1|scaffold_295242 (172292-172062) | |
| 898-1068, gnl|galGal2|chr1 (50599992-50599783) | |
| 898-1068, gnl|hg17|chr12 (105231882-105232108) | |
| 898-1068, gnl|Hg17|chr12 (105231881-105232051) | |
| 898-1068, gnl|loxAfr1|scaffold_30436 (26455-26229) | |
| 898-1068, gnl|mm7|chr10 (84145869-84146088) | |
| 898-1068, gnl|Mm7|chr10 (84145860-84146032) | |
| 898-1068, gnl|monDom2|scaffold_34 (7016733-7016505) | |
| 898-1068, gnl|oryCun1|scaffold_172546 (32671-32433) | |
| 898-1068, gnl|panTro1|chr10 (107743796-107744022) | |
| 898-1068, gnl|rheMac2|chr11 (107431072-107431298) | |
| 898-1068, gnl|rn3|chr7 (21309573-21309351) | |
| 898-1068, gnl|xenTro1|scaffold_230 (898013-898263) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 102-354, gnl|bosTau2|chr5 (42158858-42159108) | |
| 102-354, gnl|Hg17|chr12 (105207292-105207507) | |
| 367-472, gnl|bosTau2|chr5 (42159330-42159435) | |
| 367-472, gnl|canFam2|chr10 (35471792-35471674) | |
| 367-472, gnl|dasNov1|scaffold_268 (191503-191626) | |
| 367-472, gnl|echTel1|scaffold_323002 (44587-44738) | |
| 367-472, gnl|hg17|chr12 (105207512-105207650) | |
| 367-472, gnl|Hg17|chr12 (105207535-105207649) | |
| 367-472, gnl|loxAfr1|scaffold_41243 (14147-14295) | |
| 367-472, gnl|mm7|chr10 (84126452-84126587) | |
| 367-472, gnl|oryCun1|scaffold_172546 (58989-58841) | |
| 367-472, gnl|panTro1|chr10 (107719632-107719774) | |
| 367-472, gnl|rheMac2|chr11 (107406991-107407133) | |
| 367-472, gnl|rn3|chr7 (21326172-21326035) | |
| 541-763, gnl|bosTau2|chr5 (42168896-42169118) | |
| 541-763, gnl|canFam2|chr10 (35464135-35463865) | |
| 541-763, gnl|danRer3|chr4 (18296378-18296618) | |
| 541-763, gnl|dasNov1|scaffold_268 (199230-199500) | |
| 541-763, gnl|echTel1|scaffold_45881 (951-684) | |
| 541-763, gnl|fr1|chrUn (90838752-90838478) | |
| 541-763, gnl|galGal2|chr1 (50601876-50601621) | |
| 541-763, gnl|hg17|chr12 (105217716-105217982) | |
| 541-763, gnl|Hg17|chr12 (105217729-105217951) | |
| 541-763, gnl|loxAfr1|scaffold_2210 (96313-96086) | |
| 541-763, gnl|mm7|chr10 (84132435-84132702) | |
| 541-763, gnl|Mm7|chr10 (84132450-84132672) | |
| 541-763, gnl|monDom2|scaffold_34 (7029197-7028950) | |
| 541-763, gnl|oryCun1|scaffold_172546 (48938-48669) | |
| 541-763, gnl|panTro1|chr10 (107729635-107729901) | |
| 541-763, gnl|rheMac2|chr11 (107416938-107417204) | |
| 541-763, gnl|rn3|chr7 (21320386-21320119) | |
| 541-763, gnl|tetNig1|chrUn_random (91024622-91024857) | |
| 541-763, gnl|xenTro1|scaffold_230 (895773-896023) | |
| 898-1068, gnl|bosTau2|chr5 (42177958-42178128) | |
| 898-1068, gnl|canFam2|chr10 (35452582-35452355) | |
| 898-1068, gnl|danRer3|chr4 (18299232-18299452) | |
| 898-1068, gnl|dasNov1|scaffold_268 (223058-223284) | |
| 898-1068, gnl|echTel1|scaffold_295242 (172292-172062) | |
| 898-1068, gnl|galGal2|chr1 (50599992-50599783) | |
| 898-1068, gnl|hg17|chr12 (105231882-105232108) | |
| 898-1068, gnl|Hg17|chr12 (105231881-105232051) | |
| 898-1068, gnl|loxAfr1|scaffold_30436 (26455-26229) | |
| 898-1068, gnl|mm7|chr10 (84145869-84146088) | |
| 898-1068, gnl|Mm7|chr10 (84145860-84146032) | |
| 898-1068, gnl|monDom2|scaffold_34 (7016733-7016505) | |
| 898-1068, gnl|oryCun1|scaffold_172546 (32671-32433) | |
| 898-1068, gnl|panTro1|chr10 (107743796-107744022) | |
| 898-1068, gnl|rheMac2|chr11 (107431072-107431298) | |
| 898-1068, gnl|rn3|chr7 (21309573-21309351) | |
| 898-1068, gnl|xenTro1|scaffold_230 (898013-898263) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) |