Ss1.1-Pig3-SRG8020G01.3
|
TGTGGTGTCGTTCATCTGTTGCTGCCCTGAGGCTCTGGAGCCTGGGAGGCTTCTGTGCCT
GGACCCGCCGGCCTCGTATTACAGGTGGAAGAAGGTCCATATCTTTTTCTCCCGGTGCCT
CAGGTGTCTGTGGAAGTGGAGGCAACAGTAAGAAGCAGCTTCTCCTGCAGGACATAGCTG
AACTGATTAAAACCAGAGCCTGCCGGCGGGTGGTGGTCATGGTAGGGGCCGGCATCAGCA
CGCCCAGCGGCATTCCAGACTTCAGATCTCCAGGGACTGGCTACTACAGCACCCTCCAAA
GCTACGACCTCCCCTACCCCGAGGCCATTTTTGAGCTCTCATTTTTCTTCCACAATCCCA
AGCCGTTTTTCACTTTCGCCAAGGAGCTGTACCCTGGGAACTATAGGCCTAACACTGCTC
ACTACTTCCTCCGCCTGCTGCATGACAAGGGGCTGCTCCTGCGGCTCTACACCCAGAACA
TCGACGGGCTTGAGAGAGCGTCTGGCATCCCTGCCTCAAAGCTGGTTGAAGCTCATGGAT
CCTTTGCCTCTGCCACCTGCACCGTTTGCCGAAGACCCTTCCCAGGGGAGGACTTCTGGG
CCGACGTGATGGTGGACAGCGTGCCGCGCTGCCGGGTCTGTGCTGGCGTCGTGAAGCCCG
ACATCGTGTTCTTTGGGGAGCCGCTGCCCCCGAGGTTCCTGCTGCATCTGGCTGACTTCC
CCGTGGCAGATCTGCTGCTCATCCTTGGGACCTCCCTGGAGGTGGAACCTTTTGCCAGCT
TGTCTGAGGCTGTGCGGAGCTCAGTGCCCCGACTGCTCATCAACCGGGACTTGGTGGGGA
CCTTGGCGAGGCATCCTCGGGGCAGGGATGTGGTCCAGCTGGGGGACTTGGTTCACGGCG
TGAAAAGGCTGGTGGAGCTTCTGGGCTGGACCGAGGAGATGCAGGACCTCATCCAGCAGG
AGACTGGAAAGTTTGATGGTTGGGACAAATAGGAGGGCTGTACCAGAATTGGTTACGTGG
GAGTCACTGCCCTCTTCCAACAACGCCTTGTGTCTGAAGAACAGCTCGGGCACATTTACA
AATTTTGGCTGAACCAGAACATGCAACTTGAGGCGGCCCCTGGAGTGTCCTTCTAGGTTG
TATGCTCTGTGCATTTGGGCCACCCAGGCGTAGGGCAAAAGAGCTGCCTGGCCTGACTCT
TCACTCTGCTGAAGCTTTTAATGCCAAAAGCTTTCTTCTGATGGTGATCCTTCTTGAACT
CAGAGACGGACTGGAACCCAGACTGGACTCTATCTGAAGGGCGGGCTCAGCATCTGTCCA
CTGGAAAGACCCAGGCACAACCCAGGTGTGTGCCTGGGGCCCAGGTAATGTGCTTGGGTT
TTCTAGCACGTTGGTCTGTTTAGTAGGTTCATTTTTAAGTTTGTCCTTTCTGGCATGAAA
TAAATTTTAATATAGAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGTGGTGTCGTTCATCTGTTGCTGCCCTGAGGCTCTGGAGCCTGGGAGGCTTCTGTGCCT
GGACCCGCCGGCCTCGTATTACAGGTGGAAGAAGGTCCATATCTTTTTCTCCCGGTGCCT
CAGGTGTCTGTGGAAGTGGAGGCAACAGTAAGAAGCAGCTTCTCCTGCAGGACATAGCTG
AACTGATTAAAACCAGAGCCTGCCGGCGGGTGGTGGTCATGGTAGGGGCCGGCATCAGCA
CGCCCAGCGGCATTCCAGACTTCAGATCTCCAGGGACTGGCTACTACAGCACCCTCCAAA
GCTACGACCTCCCCTACCCCGAGGCCATTTTTGAGCTCTCATTTTTCTTCCACAATCCCA
AGCCGTTTTTCACTTTCGCCAAGGAGCTGTACCCTGGGAACTATAGGCCTAACACTGCTC
ACTACTTCCTCCGCCTGCTGCATGACAAGGGGCTGCTCCTGCGGCTCTACACCCAGAACA
TCGACGGGCTTGAGAGAGCGTCTGGCATCCCTGCCTCAAAGCTGGTTGAAGCTCATGGAT
CCTTTGCCTCTGCCACCTGCACCGTTTGCCGAAGACCCTTCCCAGGGGAGGACTTCTGGG
CCGACGTGATGGTGGACAGCGTGCCGCGCTGCCGGGTCTGTGCTGGCGTCGTGAAGCCCG
ACATCGTGTTCTTTGGGGAGCCGCTGCCCCCGAGGTTCCTGCTGCATCTGGCTGACTTCC
CCGTGGCAGATCTGCTGCTCATCCTTGGGACCTCCCTGGAGGTGGAACCTTTTGCCAGCT
TGTCTGAGGCTGTGCGGAGCTCAGTGCCCCGACTGCTCATCAACCGGGACTTGGTGGGGA
CCTTGGCGAGGCATCCTCGGGGCAGGGATGTGGTCCAGCTGGGGGACTTGGTTCACGGCG
TGAAAAGGCTGGTGGAGCTTCTGGGCTGGACCGAGGAGATGCAGGACCTCATCCAGCAGG
AGACTGGAAAGTTTGATGGTTGGGACAAATAGGAGGGCTGTACCAGAATTGGTTACGTGG
GAGTCACTGCCCTCTTCCAACAACGCCTTGTGTCTGAAGAACAGCTCGGGCACATTTACA
AATTTTGGCTGAACCAGAACATGCAACTTGAGGCGGCCCCTGGAGTGTCCTTCTAGGTTG
TATGCTCTGTGCATTTGGGCCACCCAGGCGTAGGGCAAAAGAGCTGCCTGGCCTGACTCT
TCACTCTGCTGAAGCTTTTAATGCCAAAAGCTTTCTTCTGATGGTGATCCTTCTTGAACT
CAGAGACGGACTGGAACCCAGACTGGACTCTATCTGAAGGGCGGGCTCAGCATCTGTCCA
CTGGAAAGACCCAGGCACAACCCAGGTGTGTGCCTGGGGCCCAGGTAATGTGCTTGGGTT
TTCTAGCACGTTGGTCTGTTTAGTAGGTTCATTTTTAAGTTTGTCCTTTCTGGCATGAAA
TAAATTTTAATATAGAAAAAAAAA
|
|
gi|12654433|gb|AAH01042.1| |
Protein identifier
|
gi|12654433|gb|AAH01042.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
260-498, gnl|bosTau2|chr29 (45581207-45581445) |
|
260-498, gnl|Hg17|chr11 (223221-222983) |
|
260-498, gnl|Mm7|chr7 (137295151-137294913) |
| |
|
734-971, gnl|bosTau2|chr29 (45594587-45594823) |
|
734-971, gnl|canFam2|chr18 (28360486-28360708) |
|
734-971, gnl|danRer3|chr18 (12005877-12006079) |
|
734-971, gnl|dasNov1|scaffold_66868 (10896-11118) |
|
734-971, gnl|fr1|chrUn (23904657-23904476) |
|
734-971, gnl|galGal2|chr5 (1833788-1834004) |
|
734-971, gnl|hg17|chr11 (208826-209048) |
|
734-971, gnl|Hg17|chr11 (209068-208832) |
|
734-971, gnl|mm7|chr7 (137282290-137282454) |
|
734-971, gnl|Mm7|chr7 (137282474-137282238) |
|
734-971, gnl|monDom2|scaffold_28 (47259-47028) |
|
734-971, gnl|panTro1|chr9 (259520-259742) |
|
734-971, gnl|rn3|chr1 (201172596-201172818) |
|
734-971, gnl|tetNig1|chr13 (4615635-4615438) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
260-498, gnl|bosTau2|chr29 (45581207-45581445) |
|
260-498, gnl|Hg17|chr11 (223221-222983) |
|
260-498, gnl|Mm7|chr7 (137295151-137294913) |
| |
|
734-971, gnl|bosTau2|chr29 (45594587-45594823) |
|
734-971, gnl|canFam2|chr18 (28360486-28360708) |
|
734-971, gnl|danRer3|chr18 (12005877-12006079) |
|
734-971, gnl|dasNov1|scaffold_66868 (10896-11118) |
|
734-971, gnl|fr1|chrUn (23904657-23904476) |
|
734-971, gnl|galGal2|chr5 (1833788-1834004) |
|
734-971, gnl|hg17|chr11 (208826-209048) |
|
734-971, gnl|Hg17|chr11 (209068-208832) |
|
734-971, gnl|mm7|chr7 (137282290-137282454) |
|
734-971, gnl|Mm7|chr7 (137282474-137282238) |
|
734-971, gnl|monDom2|scaffold_28 (47259-47028) |
|
734-971, gnl|panTro1|chr9 (259520-259742) |
|
734-971, gnl|rn3|chr1 (201172596-201172818) |
|
734-971, gnl|tetNig1|chr13 (4615635-4615438) |
|
fhi (0.339155) |
|
hea (0.204499) |
|
fli (0.202881) |
|
ill (0.175593) |
|
nje (0.16592) |
|
cje (0.165235) |
|
lnt (0.142308) |
|
ute (0.132784) |
|
sug (0.127291) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
fhi (0.339155) |
|
hea (0.204499) |
|
fli (0.202881) |
|
ill (0.175593) |
|
nje (0.16592) |
|
cje (0.165235) |
|
lnt (0.142308) |
|
ute (0.132784) |
|
sug (0.127291) |
|
pgl (0.118483) |
|
jca (0.11396) |
