Non-Coding RNA Search

Ss1.1-Pig3-SRG8020G08.3

Sequence:


               
               CTTTTGAATCACAATTTTTAATTTATGATTATACTTAACCTTAGACTCCTTTTCATTTTT
TTTTTTTTTTAATTAAGTTGACTTGGCTCTTTTCCCCCAAGTAAAACTAGTGCTAGCCCC
CAAGCTTGAAAGTAAAACTCCAGCCCACAGGGAATTTTGTGTTTCTTGATAAACCTGTAA
CCCAAACCAAGAGATGCTGGTACCTGGTCTTTGCAGTGGGATTGGTCTGCTTAAAAGTCC
CTTTAAAGGCCTGTTGAGTTTAGTGCAGAGCTCTTTTTGAAATGAAGGCTGGATGTGCAT
TTTTCAGGGTATTAACTGGTTGTATCTTATTAGCCAGGAGATTTGGGTTTTGAATGTTTG
TGTGGGAGGTTTTAATTTGCCAGGGAACAGTGGCAGGCTGCTAGTGAGGCAGTGAGAAGC
TCTTGGCAGCCAAATGGGTGCATCCGGGGCCAATTTGCAGAGACCCTCGGCTTCTCCCTC
TCCTACTCCTTGTCTCTCTGGCATTTTACAGCTCATTAGTTTTCGCCAGAGGGGTGGGTC
AGAGCAGTGGAGAGGAGCCCACCCACCTGCCTTTGCTGCTGGTCCTTAGACTGATGGTTG
GTGGAGGAGTTGACGTCATGAGCTAGGCTTGGCTTTTCATAACTCCCCGAATCTGGAAGG
AACATCTCCAAATACCTCGGGGGTTCTTCTGGTGAGATAGGACTGGCGTTTCTGGTTCTG
GTTGGATGTTTCTTGCAGGGAGATGAAGTAGCCTGACTGTTGACCCAGTCCTAGGCCTGT
GGCCCATGACCTCTTGGTAGTTTTAAATAGGGTTGAGGATTTTGCTTGTTTTTTAAAAAC
CCTTGCCTTTTGTCTTACCCTTTCACCATTTTTTTTTTCCTGGAAGCTTGGTGGACTCCA
TTTTAGTGGTCCTGCAGTCTTTCCTAAAAACCTACATTTGTTTTTGGGGATTTTTTTTTT
TTTTTCCACTTTTTAGGGCTGCACGGGCAGCATATGGAAGTTCCTAGGCTAGGGGTCGCA
TCGGAGCTGCAGCTGCCAGCCTGTGCCACAGCAATGCCAGATCTTAGCCGTGTCTGACTA
TGCTGCAGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTGAATCACAATTTTTAATTTATGATTATACTTAACCTTAGACTCCTTTTCATTTTT
TTTTTTTTTTAATTAAGTTGACTTGGCTCTTTTCCCCCAAGTAAAACTAGTGCTAGCCCC
CAAGCTTGAAAGTAAAACTCCAGCCCACAGGGAATTTTGTGTTTCTTGATAAACCTGTAA
CCCAAACCAAGAGATGCTGGTACCTGGTCTTTGCAGTGGGATTGGTCTGCTTAAAAGTCC
CTTTAAAGGCCTGTTGAGTTTAGTGCAGAGCTCTTTTTGAAATGAAGGCTGGATGTGCAT
TTTTCAGGGTATTAACTGGTTGTATCTTATTAGCCAGGAGATTTGGGTTTTGAATGTTTG
TGTGGGAGGTTTTAATTTGCCAGGGAACAGTGGCAGGCTGCTAGTGAGGCAGTGAGAAGC
TCTTGGCAGCCAAATGGGTGCATCCGGGGCCAATTTGCAGAGACCCTCGGCTTCTCCCTC
TCCTACTCCTTGTCTCTCTGGCATTTTACAGCTCATTAGTTTTCGCCAGAGGGGTGGGTC
AGAGCAGTGGAGAGGAGCCCACCCACCTGCCTTTGCTGCTGGTCCTTAGACTGATGGTTG
GTGGAGGAGTTGACGTCATGAGCTAGGCTTGGCTTTTCATAACTCCCCGAATCTGGAAGG
AACATCTCCAAATACCTCGGGGGTTCTTCTGGTGAGATAGGACTGGCGTTTCTGGTTCTG
GTTGGATGTTTCTTGCAGGGAGATGAAGTAGCCTGACTGTTGACCCAGTCCTAGGCCTGT
GGCCCATGACCTCTTGGTAGTTTTAAATAGGGTTGAGGATTTTGCTTGTTTTTTAAAAAC
CCTTGCCTTTTGTCTTACCCTTTCACCATTTTTTTTTTCCTGGAAGCTTGGTGGACTCCA
TTTTAGTGGTCCTGCAGTCTTTCCTAAAAACCTACATTTGTTTTTGGGGATTTTTTTTTT
TTTTTCCACTTTTTAGGGCTGCACGGGCAGCATATGGAAGTTCCTAGGCTAGGGGTCGCA
TCGGAGCTGCAGCTGCCAGCCTGTGCCACAGCAATGCCAGATCTTAGCCGTGTCTGACTA
TGCTGCAGCTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               319-577, + strand, RNAz p=0.999981

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-577, + strand, RNAz p=0.999981

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               486-599, + strand, RNAmicro p=1
               

               
               477-623, - strand, RNAmicro p=0.99982

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               486-599, + strand, RNAmicro p=1
               

               
               477-623, - strand, RNAmicro p=0.99982

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               319-557, DKFZp459L1515_r1 459 (synonym (emb|CR537588.1|), blast E-value=0, 
identity=90.46% 
               

               
               319-557, DKFZp459D1039_r1 459 (synonym (emb|CR548348.1|), blast E-value=0, 
identity=90.46% 
               

               
               319-557, DKFZp459H0246_r1 459 (synonym (emb|CR555459.1|), blast E-value=0, 
identity=90.04% 
               

               
               319-557, DKFZp469D2039_r1 469 (synonym (emb|CR768255.1|), blast E-value=0, 
identity=90.46% 
               

               
               319-557, DKFZp459O0462_r1 459 (synonym (emb|CR773779.1|), blast E-value=0, 
identity=90.46% 
               

               
               425-577, EST002374 brain and spinal cord cDNA library in Gecko Gekko 
(gb|DN763246.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               319-557, DKFZp459L1515_r1 459 (synonym (emb|CR537588.1|), blast E-value=0, 
identity=90.46% 
               

               
               319-557, DKFZp459D1039_r1 459 (synonym (emb|CR548348.1|), blast E-value=0, 
identity=90.46% 
               

               
               319-557, DKFZp459H0246_r1 459 (synonym (emb|CR555459.1|), blast E-value=0, 
identity=90.04% 
               

               
               319-557, DKFZp469D2039_r1 469 (synonym (emb|CR768255.1|), blast E-value=0, 
identity=90.46% 
               

               
               319-557, DKFZp459O0462_r1 459 (synonym (emb|CR773779.1|), blast E-value=0, 
identity=90.46% 
               

               
               425-577, EST002374 brain and spinal cord cDNA library in Gecko Gekko 
(gb|DN763246.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-940, gnl|bosTau2|chr10 (69305372-69304458)
               

               
               15-940, gnl|Hg17|chr14 (89942208-89943137)
               

               
               15-940, gnl|Mm7|chr12 (97703094-97703961)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-940, gnl|bosTau2|chr10 (69305372-69304458)
               

               
               15-940, gnl|Hg17|chr14 (89942208-89943137)
               

               
               15-940, gnl|Mm7|chr12 (97703094-97703961)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               eep (0.245128)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	486-599, + strand, RNAmicro p=1
	477-623, - strand, RNAmicro p=0.99982

	319-557, DKFZp459L1515_r1 459 (synonym (emb\|CR537588.1\|), blast E-value=0, identity=90.46%
	319-557, DKFZp459D1039_r1 459 (synonym (emb\|CR548348.1\|), blast E-value=0, identity=90.46%
	319-557, DKFZp459H0246_r1 459 (synonym (emb\|CR555459.1\|), blast E-value=0, identity=90.04%
	319-557, DKFZp469D2039_r1 469 (synonym (emb\|CR768255.1\|), blast E-value=0, identity=90.46%
	319-557, DKFZp459O0462_r1 459 (synonym (emb\|CR773779.1\|), blast E-value=0, identity=90.46%
	425-577, EST002374 brain and spinal cord cDNA library in Gecko Gekko (gb\|DN763246.1\|), blast E-value=0, identity=100%

	15-940, gnl\|bosTau2\|chr10 (69305372-69304458)
	15-940, gnl\|Hg17\|chr14 (89942208-89943137)
	15-940, gnl\|Mm7\|chr12 (97703094-97703961)

	eep (0.245128)
	nje (0.16592)
	nco (0.161734)
	hyp (0.142837)
	nmm (0.132802)
	ebs (0.118301)
	cty (0.10408)