Non-Coding RNA Search

Ss1.1-Pig3-SRG8020G10.3

Sequence:


               
               GTAGTTGTTCAGATGTGCTCCTTTTTGCTGTCTTGTGAGTCTTAGCCAGTGATCCAGGTG
CCCAAGGAGAGAGTCTCCAGAGGGCCTCGCTCCTTCCCGGTACCGAGCGTGTGCTCCTGA
CCTGTGTGAACGTGGTCTTGTCAAAAGCAGCGAAGCGAGAAGTTCTGCAAATGGTGATCC
AGACGATCTGCGCGTATCCCTTGGGCCTGGATTTCCACTCTGTTAGTGCGTGTAGGGAAA
TACTGTGTCTTTTATGGATGAAAATTCAATGTATGCTGTGAATTTGTTGGTTTGAAACAT
TGAAAATTTTTCATTAGACAATGTTTACATACCTCACCTGAAGAACCTTTGAGAGTGTAT
ATATGAAATTTAAAATATATTAAGTTGCTTTAAAACCATATGTACAGCTATAAAAGTTGG
AGTTATTTTAACTTTGAATATGTACCAAGTCTCTTAAATATTGAAATCTTGTGGACTTTT
TGTGCTTCTGTGTTTTACTTTCCTGTTAGGCCATGTAGGAGACTGTGTTCTTGTTATTGG
TAAAGGGGCCCTCGCTGAAATCCAAGCTTGGAAGGATTTCCTTTGTTGTTTCAGATTTTC
TTGTTTGGTTCTGAGGAATGGGGTATGGAGCTAGAGGATGTGCGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGTTGTTCAGATGTGCTCCTTTTTGCTGTCTTGTGAGTCTTAGCCAGTGATCCAGGTG
CCCAAGGAGAGAGTCTCCAGAGGGCCTCGCTCCTTCCCGGTACCGAGCGTGTGCTCCTGA
CCTGTGTGAACGTGGTCTTGTCAAAAGCAGCGAAGCGAGAAGTTCTGCAAATGGTGATCC
AGACGATCTGCGCGTATCCCTTGGGCCTGGATTTCCACTCTGTTAGTGCGTGTAGGGAAA
TACTGTGTCTTTTATGGATGAAAATTCAATGTATGCTGTGAATTTGTTGGTTTGAAACAT
TGAAAATTTTTCATTAGACAATGTTTACATACCTCACCTGAAGAACCTTTGAGAGTGTAT
ATATGAAATTTAAAATATATTAAGTTGCTTTAAAACCATATGTACAGCTATAAAAGTTGG
AGTTATTTTAACTTTGAATATGTACCAAGTCTCTTAAATATTGAAATCTTGTGGACTTTT
TGTGCTTCTGTGTTTTACTTTCCTGTTAGGCCATGTAGGAGACTGTGTTCTTGTTATTGG
TAAAGGGGCCCTCGCTGAAATCCAAGCTTGGAAGGATTTCCTTTGTTGTTTCAGATTTTC
TTGTTTGGTTCTGAGGAATGGGGTATGGAGCTAGAGGATGTGCGGGAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               225-344, - strand, RNAz p=0.917566
               

               
               531-648, + strand, RNAz p=0.523857

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               225-344, - strand, RNAz p=0.917566
               

               
               531-648, + strand, RNAz p=0.523857

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-648, gnl|bosTau2|chr26 (8560871-8560255)
               

               
               26-648, gnl|Hg17|chr10 (98744996-98745617)
               

               
               26-648, gnl|Mm7|chr19 (41489352-41489919)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-648, gnl|bosTau2|chr26 (8560871-8560255)
               

               
               26-648, gnl|Hg17|chr10 (98744996-98745617)
               

               
               26-648, gnl|Mm7|chr19 (41489352-41489919)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sin (0.174948)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	225-344, - strand, RNAz p=0.917566
	531-648, + strand, RNAz p=0.523857

	26-648, gnl\|bosTau2\|chr26 (8560871-8560255)
	26-648, gnl\|Hg17\|chr10 (98744996-98745617)
	26-648, gnl\|Mm7\|chr19 (41489352-41489919)