Non-Coding RNA Search

Ss1.1-Pig3-SRG8020I06.3

Sequence:


               
               GAGGAACCCCCAAGACACCAAGCCAGTGACTCGGAAAATGAGGAGCTTCCCAAACCTCGA
ATTAGTGATTCATAAAGTGAGGAGCTTCCCAAACCTCGGATCAGTGACTCATAGAGTGAG
GAGCCTCATAGGACTCAAGCCAGTGACTCTGAAAATGAGGAGCTTCCCAAACCCCGTGTC
AGTGACTCGGAAAGTGAGGACCCGCCGAGGCACCAAGCCAGTGACTCTGAAAACGAGGAG
CTTCCCAAACCCCGTATCACTGACTCATAAAGTGAGGATCCCCCAAGGCACCAAGCCAGT
GACTCGGAAAATGAGGAGCTCCCCAAGCCCCGTATTAGTGATTCCGAAAGTGAGGACCCC
CCAAGGAACCAGGCCAGTGATTCGGAAAATGAGGAGCTTCCCAAACCCCGAGTCAGTGAC
TCTGAGAGTGAGGAACCTCATAAGGGACCTGCCAGTGATTCGGAAACTGATGATGCCTCC
AGACACAAACAGAAGCCATAGTCTGATGATGACAGTGATGGGGAGAATAAGGGAGAGAAT
ACAGAAATGAAAAATGACTCCTTTCATTCAGATACCCATGCAGACAGGAAACGGTTCAAC
AGTTCTGATAGCGAGGAGGAAGAACCCAAAAGGCCCAAAATTGACAGTGATGAAGATGAA
GAAAAAGAGGGGGAGGAGGAGAAAGCAGCAAAGCGAAAAGCTGCTGTGCTTTCTGATAGT
GATGATGAAGAGAAAGCATCAGCAAAGAAGAGTCGTGTTGTGTCTGATGCAGATGACTCT
GACAGTGATGTTATATCAGACAAATCAGGCAAAAGAGAGAAGACTATAGAATCTGACAGT
GAAGAAGAAGCAGGGAAAGAGGAGTTGTCTGATAAAAAAAATGAAGAGAAAGACCTGTTT
GGGAGTGACAGTGAGTCAGGGAATGAAGAAGAAAATCTTATTGCAGATATTTGGAGAATC
TGGTGATGAAGAGGAAGAAGAATTTACAGGTTTTAACCAAGAAGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAACCCCCAAGACACCAAGCCAGTGACTCGGAAAATGAGGAGCTTCCCAAACCTCGA
ATTAGTGATTCATAAAGTGAGGAGCTTCCCAAACCTCGGATCAGTGACTCATAGAGTGAG
GAGCCTCATAGGACTCAAGCCAGTGACTCTGAAAATGAGGAGCTTCCCAAACCCCGTGTC
AGTGACTCGGAAAGTGAGGACCCGCCGAGGCACCAAGCCAGTGACTCTGAAAACGAGGAG
CTTCCCAAACCCCGTATCACTGACTCATAAAGTGAGGATCCCCCAAGGCACCAAGCCAGT
GACTCGGAAAATGAGGAGCTCCCCAAGCCCCGTATTAGTGATTCCGAAAGTGAGGACCCC
CCAAGGAACCAGGCCAGTGATTCGGAAAATGAGGAGCTTCCCAAACCCCGAGTCAGTGAC
TCTGAGAGTGAGGAACCTCATAAGGGACCTGCCAGTGATTCGGAAACTGATGATGCCTCC
AGACACAAACAGAAGCCATAGTCTGATGATGACAGTGATGGGGAGAATAAGGGAGAGAAT
ACAGAAATGAAAAATGACTCCTTTCATTCAGATACCCATGCAGACAGGAAACGGTTCAAC
AGTTCTGATAGCGAGGAGGAAGAACCCAAAAGGCCCAAAATTGACAGTGATGAAGATGAA
GAAAAAGAGGGGGAGGAGGAGAAAGCAGCAAAGCGAAAAGCTGCTGTGCTTTCTGATAGT
GATGATGAAGAGAAAGCATCAGCAAAGAAGAGTCGTGTTGTGTCTGATGCAGATGACTCT
GACAGTGATGTTATATCAGACAAATCAGGCAAAAGAGAGAAGACTATAGAATCTGACAGT
GAAGAAGAAGCAGGGAAAGAGGAGTTGTCTGATAAAAAAAATGAAGAGAAAGACCTGTTT
GGGAGTGACAGTGAGTCAGGGAATGAAGAAGAAAATCTTATTGCAGATATTTGGAGAATC
TGGTGATGAAGAGGAAGAAGAATTTACAGGTTTTAACCAAGAAGATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61828885|ref|XP_581499.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61828885|ref|XP_581499.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-119, - strand, RNAz p=0.543427
               

               
               160-439, - strand, RNAz p=0.932636
               

               
               623-739, + strand, RNAz p=0.697978

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.543427
               

               
               160-439, - strand, RNAz p=0.932636
               

               
               623-739, + strand, RNAz p=0.697978

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-739, gnl|bosTau2|chr2 (3799634-3800372)
               

               
               1-739, gnl|Hg17|chr2 (127979147-127978490)
               

               
               1-739, gnl|Mm7|chr18 (32472048-32472655)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-739, gnl|bosTau2|chr2 (3799634-3800372)
               

               
               1-739, gnl|Hg17|chr2 (127979147-127978490)
               

               
               1-739, gnl|Mm7|chr18 (32472048-32472655)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               cty (0.10408)

	1-119, - strand, RNAz p=0.543427
	160-439, - strand, RNAz p=0.932636
	623-739, + strand, RNAz p=0.697978

	1-739, gnl\|bosTau2\|chr2 (3799634-3800372)
	1-739, gnl\|Hg17\|chr2 (127979147-127978490)
	1-739, gnl\|Mm7\|chr18 (32472048-32472655)