Ss1.1-Pig3-SRG8020J17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAAGTCTGACTTGGGCTCGTCCGGCTCCTGCCACAGGAAGACGGCAGCCGCGCTGCAG GCCCGGCTGGTGGACGTGCTGCTGAGCGACAACGAGTCCCTGCGCAGAGCGCTCAGCACG GTGACCCGGGAGAAGGCGGAGCTGTGCCGGGCCCTGTCCCAGCTGGAGAGGAGCCCCCGG GCCTCGAGGGCCCTGCAGGAGAGCTGCACGCGCCGGATGGAGAAGTTGTACCTGCATTAT TTGAGAGCAGAGAGCTTTAGAAAAGCCCTGATTTATCAAAAGAAGTATCTTTTACTGTTG ATCGGTGGATTCCAAGACTCTGAACAAGAAACACTCTCCATGATCGCCCACTTGGGCGTC TTTCCTTCCCAAGCGGATAAGAAAGCGCCAGCGTCCCGGCCCTTGGCGAGGTTCCGCACG GCCGTCAGGGTGGTGGTCGCCGTCTTAAGGTTACGCTTTTTGGTCAAGAAGTGGCAGCAG GTGGACGGCAGAGGAGCCCTAGCGCCGGGCCGGGCGCCTCGACCAGCTGTTGCAGTGCCA CGGCGGCAACGGTCTCCACCTGACGCCCTCGAATCCCCACCAACCCGGGATGTGTCTTCC AGCCATGCCAGGGACCCTGTGCGGAAAGCCTCACTGTGCCGGAGGGACAGATCCAGTCCG GCCCCAAATCCCAGATCTGAAAGATCCCTGAGTGCTTCTCAAGATCCAGAACGTTCCTTG ACGGAATATATTCACCATTTAGAGATGATCCAGCAAAGACTGGGAGCTGCGCCACCAGAT TCCACTTCAAAGAAGTCCTGCCAGAAGATTAAACAGTGAATAAAATCCTTGTGGCTCTCA CCCGTGACAGTTGTATTTGAGGAAAAGACCCAATTTCCGAGGGAAGCATGTGGTGCGGGC TGGCGCGCTGGGCGGCATTGTCATCATACGTGTCCTCACGCTGACGCTGTGCTCAGAGCC AAGGGGGTGTTTTCCGTGTGGTTTTAGCACATTGTAGCTTCGTATTTTGGCCGTGTGGGC GCCTGCCTGATCCTGCCGGCCTTGGCCTGGGGGAGGCAGAGGATGGCTTCCTGCCCTTTG TTTTCCTAAAGTGTACAGGTGGATGCTTTGTTTAAAAACCAGAACACACCAAAAAAATCC AAACAAACAAACAAACAAAACCAATAAAATCAAAGCCCTGTGGTGTTTGTGAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAAGTCTGACTTGGGCTCGTCCGGCTCCTGCCACAGGAAGACGGCAGCCGCGCTGCAG GCCCGGCTGGTGGACGTGCTGCTGAGCGACAACGAGTCCCTGCGCAGAGCGCTCAGCACG GTGACCCGGGAGAAGGCGGAGCTGTGCCGGGCCCTGTCCCAGCTGGAGAGGAGCCCCCGG GCCTCGAGGGCCCTGCAGGAGAGCTGCACGCGCCGGATGGAGAAGTTGTACCTGCATTAT TTGAGAGCAGAGAGCTTTAGAAAAGCCCTGATTTATCAAAAGAAGTATCTTTTACTGTTG ATCGGTGGATTCCAAGACTCTGAACAAGAAACACTCTCCATGATCGCCCACTTGGGCGTC TTTCCTTCCCAAGCGGATAAGAAAGCGCCAGCGTCCCGGCCCTTGGCGAGGTTCCGCACG GCCGTCAGGGTGGTGGTCGCCGTCTTAAGGTTACGCTTTTTGGTCAAGAAGTGGCAGCAG GTGGACGGCAGAGGAGCCCTAGCGCCGGGCCGGGCGCCTCGACCAGCTGTTGCAGTGCCA CGGCGGCAACGGTCTCCACCTGACGCCCTCGAATCCCCACCAACCCGGGATGTGTCTTCC AGCCATGCCAGGGACCCTGTGCGGAAAGCCTCACTGTGCCGGAGGGACAGATCCAGTCCG GCCCCAAATCCCAGATCTGAAAGATCCCTGAGTGCTTCTCAAGATCCAGAACGTTCCTTG ACGGAATATATTCACCATTTAGAGATGATCCAGCAAAGACTGGGAGCTGCGCCACCAGAT TCCACTTCAAAGAAGTCCTGCCAGAAGATTAAACAGTGAATAAAATCCTTGTGGCTCTCA CCCGTGACAGTTGTATTTGAGGAAAAGACCCAATTTCCGAGGGAAGCATGTGGTGCGGGC TGGCGCGCTGGGCGGCATTGTCATCATACGTGTCCTCACGCTGACGCTGTGCTCAGAGCC AAGGGGGTGTTTTCCGTGTGGTTTTAGCACATTGTAGCTTCGTATTTTGGCCGTGTGGGC GCCTGCCTGATCCTGCCGGCCTTGGCCTGGGGGAGGCAGAGGATGGCTTCCTGCCCTTTG TTTTCCTAAAGTGTACAGGTGGATGCTTTGTTTAAAAACCAGAACACACCAAAAAAATCC AAACAAACAAACAAACAAAACCAATAAAATCAAAGCCCTGTGGTGTTTGTGAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 216-374, - strand, RNAz p=0.949326 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 216-374, - strand, RNAz p=0.949326 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 27-213, gnl|bosTau2|chr1 (65588263-65588078) | |
| 27-213, gnl|Hg17|chr21 (46682498-46682669) | |
| 27-213, gnl|Mm7|chr10 (76023144-76022962) | |
| 216-451, gnl|bosTau2|chr1 (65580891-65580656) | |
| 216-451, gnl|canFam2|chr31 (42040561-42040818) | |
| 216-451, gnl|danRer3|chr6 (6871004-6870751) | |
| 216-451, gnl|dasNov1|scaffold_75548 (5050-5303) | |
| 216-451, gnl|echTel1|scaffold_220243 (3387-3130) | |
| 216-451, gnl|fr1|chrUn (12952562-12952320) | |
| 216-451, gnl|galGal2|chr7 (6914186-6913916) | |
| 216-451, gnl|hg17|chr21 (46685175-46685436) | |
| 216-451, gnl|Hg17|chr21 (46685195-46685427) | |
| 216-451, gnl|loxAfr1|scaffold_76214 (6576-6832) | |
| 216-451, gnl|mm7|chr10 (76012071-76011806) | |
| 216-451, gnl|Mm7|chr10 (76012048-76011813) | |
| 216-451, gnl|monDom2|scaffold_190 (906092-905834) | |
| 216-451, gnl|oryCun1|scaffold_156561 (67-331) | |
| 216-451, gnl|panTro1|chr22 (47088224-47088485) | |
| 216-451, gnl|rheMac2|chr3 (341973-341716) | |
| 216-451, gnl|rn3|chr20 (12689635-12689896) | |
| 216-451, gnl|tetNig1|chr10 (8354792-8355034) | |
| 216-451, gnl|xenTro1|scaffold_855 (515720-515979) | |
| 535-647, gnl|bosTau2|chr1 (65578090-65577978) | |
| 535-647, gnl|canFam2|chr31 (42042499-42042682) | |
| 535-647, gnl|dasNov1|scaffold_75548 (8087-8276) | |
| 535-647, gnl|echTel1|scaffold_181505 (6563-6340) | |
| 535-647, gnl|hg17|chr21 (46688093-46688320) | |
| 535-647, gnl|Hg17|chr21 (46688159-46688286) | |
| 535-647, gnl|loxAfr1|scaffold_167523 (1275-1494) | |
| 535-647, gnl|mm7|chr10 (76010019-76009796) | |
| 535-647, gnl|Mm7|chr10 (76009954-76009827) | |
| 535-647, gnl|oryCun1|scaffold_176969 (53419-53202) | |
| 535-647, gnl|panTro1|chr22 (47091137-47091364) | |
| 535-647, gnl|rheMac2|chr3 (339130-338903) | |
| 535-647, gnl|rn3|chr20 (12691581-12691801) | |
| 649-778, gnl|bosTau2|chr1 (65576280-65576151) | |
| 649-778, gnl|Hg17|chr21 (46689033-46689162) | |
| 649-778, gnl|Mm7|chr10 (76008689-76008560) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 27-213, gnl|bosTau2|chr1 (65588263-65588078) | |
| 27-213, gnl|Hg17|chr21 (46682498-46682669) | |
| 27-213, gnl|Mm7|chr10 (76023144-76022962) | |
| 216-451, gnl|bosTau2|chr1 (65580891-65580656) | |
| 216-451, gnl|canFam2|chr31 (42040561-42040818) | |
| 216-451, gnl|danRer3|chr6 (6871004-6870751) | |
| 216-451, gnl|dasNov1|scaffold_75548 (5050-5303) | |
| 216-451, gnl|echTel1|scaffold_220243 (3387-3130) | |
| 216-451, gnl|fr1|chrUn (12952562-12952320) | |
| 216-451, gnl|galGal2|chr7 (6914186-6913916) | |
| 216-451, gnl|hg17|chr21 (46685175-46685436) | |
| 216-451, gnl|Hg17|chr21 (46685195-46685427) | |
| 216-451, gnl|loxAfr1|scaffold_76214 (6576-6832) | |
| 216-451, gnl|mm7|chr10 (76012071-76011806) | |
| 216-451, gnl|Mm7|chr10 (76012048-76011813) | |
| 216-451, gnl|monDom2|scaffold_190 (906092-905834) | |
| 216-451, gnl|oryCun1|scaffold_156561 (67-331) | |
| 216-451, gnl|panTro1|chr22 (47088224-47088485) | |
| 216-451, gnl|rheMac2|chr3 (341973-341716) | |
| 216-451, gnl|rn3|chr20 (12689635-12689896) | |
| 216-451, gnl|tetNig1|chr10 (8354792-8355034) | |
| 216-451, gnl|xenTro1|scaffold_855 (515720-515979) | |
| 535-647, gnl|bosTau2|chr1 (65578090-65577978) | |
| 535-647, gnl|canFam2|chr31 (42042499-42042682) | |
| 535-647, gnl|dasNov1|scaffold_75548 (8087-8276) | |
| 535-647, gnl|echTel1|scaffold_181505 (6563-6340) | |
| 535-647, gnl|hg17|chr21 (46688093-46688320) | |
| 535-647, gnl|Hg17|chr21 (46688159-46688286) | |
| 535-647, gnl|loxAfr1|scaffold_167523 (1275-1494) | |
| 535-647, gnl|mm7|chr10 (76010019-76009796) | |
| 535-647, gnl|Mm7|chr10 (76009954-76009827) | |
| 535-647, gnl|oryCun1|scaffold_176969 (53419-53202) | |
| 535-647, gnl|panTro1|chr22 (47091137-47091364) | |
| 535-647, gnl|rheMac2|chr3 (339130-338903) | |
| 535-647, gnl|rn3|chr20 (12691581-12691801) | |
| 649-778, gnl|bosTau2|chr1 (65576280-65576151) | |
| 649-778, gnl|Hg17|chr21 (46689033-46689162) | |
| 649-778, gnl|Mm7|chr10 (76008689-76008560) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| nbm (0.297974) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.297974) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| med (0.116252) | |
| jca (0.11396) |