Ss1.1-Pig3-SRG8020K15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGACCTGTGGGAATGGAGGAAGATCCATCAGAAAAACATCCGGATGTGGATCTGGACCG CCAGTCTTTAAGCAGCATAGATAAAAATGCCTCTGAGAGAGGCCAGAGCCAACTCTCTAA TCCAACCGATGACAGCTGGAAAGCTAGACCATATGCAAATCAGAAACTGTTTGCCAGCCT CCTCATCAAGTGTGTGGTCCAGTTGGAATTGATACAGACCATTGACAACATCGTGTTCTA CCCTGCAACGAGCAAAAAGGAAGATGCCGAGCACCTGGTTGCTGCCCAGCAAGACACGCT GGATGCGGATATCCACATAGAGACAGAGGACCAGGGCATGTATAAGTGCATGTCTTCCCA GCACCTCTTCAAGCTGTTGGACTGCTTGCAGGAGTCCCATTCATTCTCAAAGGCCTTCAA TTCCAACTATGAGCAGCGGACCGTCCTGTGGCGAGCAGGTTTTAAGGGCAAGTCTAAACC CAATCTTCTAAAACAAGAAACCAGCAGCCTGGCCTGTTGTTTGAGGATCCTCTTTCGAAT GTATGTCGATGAAAACCGCAGGGATTCCTGGGAGGAAATACAGCAGCGACTTTTAACTGT ATGCAGTGAGGCTCTTGCCTATTTCATCACCGTGAATTCCGAAAGCCATCGGGAGGCCTG GACCAGTCTCCTGCTGTTACTTCTAACGAAAACCCTCAAAATAAATGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGACCTGTGGGAATGGAGGAAGATCCATCAGAAAAACATCCGGATGTGGATCTGGACCG CCAGTCTTTAAGCAGCATAGATAAAAATGCCTCTGAGAGAGGCCAGAGCCAACTCTCTAA TCCAACCGATGACAGCTGGAAAGCTAGACCATATGCAAATCAGAAACTGTTTGCCAGCCT CCTCATCAAGTGTGTGGTCCAGTTGGAATTGATACAGACCATTGACAACATCGTGTTCTA CCCTGCAACGAGCAAAAAGGAAGATGCCGAGCACCTGGTTGCTGCCCAGCAAGACACGCT GGATGCGGATATCCACATAGAGACAGAGGACCAGGGCATGTATAAGTGCATGTCTTCCCA GCACCTCTTCAAGCTGTTGGACTGCTTGCAGGAGTCCCATTCATTCTCAAAGGCCTTCAA TTCCAACTATGAGCAGCGGACCGTCCTGTGGCGAGCAGGTTTTAAGGGCAAGTCTAAACC CAATCTTCTAAAACAAGAAACCAGCAGCCTGGCCTGTTGTTTGAGGATCCTCTTTCGAAT GTATGTCGATGAAAACCGCAGGGATTCCTGGGAGGAAATACAGCAGCGACTTTTAACTGT ATGCAGTGAGGCTCTTGCCTATTTCATCACCGTGAATTCCGAAAGCCATCGGGAGGCCTG GACCAGTCTCCTGCTGTTACTTCTAACGAAAACCCTCAAAATAAATGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 45-404, + strand, RNAz p=0.781078 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 45-404, + strand, RNAz p=0.781078 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 36-164, gnl|bosTau2|chr13 (57426929-57427058) | |
| 36-164, gnl|Hg17|chr20 (47068819-47068948) | |
| 36-164, gnl|Mm7|chr2 (166621818-166621946) | |
| 286-460, gnl|bosTau2|chr13 (57432784-57432958) | |
| 286-460, gnl|Hg17|chr20 (47075253-47075427) | |
| 286-460, gnl|Mm7|chr2 (166630919-166631093) | |
| 598-708, gnl|bosTau2|chr13 (57436717-57436827) | |
| 598-708, gnl|canFam2|chr24 (38717710-38717875) | |
| 598-708, gnl|danRer3|chr5 (41010212-41010367) | |
| 598-708, gnl|dasNov1|scaffold_20628 (5151-5314) | |
| 598-708, gnl|echTel1|scaffold_293921 (8589-8457) | |
| 598-708, gnl|fr1|chrUn (87686929-87687091) | |
| 598-708, gnl|galGal2|chr20 (6131242-6131378) | |
| 598-708, gnl|hg17|chr20 (47081986-47082154) | |
| 598-708, gnl|Hg17|chr20 (47081993-47082103) | |
| 598-708, gnl|loxAfr1|scaffold_5759 (33597-33453) | |
| 598-708, gnl|mm7|chr2 (166634148-166634297) | |
| 598-708, gnl|Mm7|chr2 (166634155-166634265) | |
| 598-708, gnl|monDom2|scaffold_1 (160288342-160288501) | |
| 598-708, gnl|oryCun1|scaffold_143950 (5730-5858) | |
| 598-708, gnl|panTro1|chr21_random (14211534-14211366) | |
| 598-708, gnl|rheMac2|chr10 (15459201-15459035) | |
| 598-708, gnl|rn3|chr3 (157955935-157956073) | |
| 598-708, gnl|tetNig1|chr6 (2460794-2460928) | |
| 598-708, gnl|xenTro1|scaffold_184 (909047-908892) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-164, gnl|bosTau2|chr13 (57426929-57427058) | |
| 36-164, gnl|Hg17|chr20 (47068819-47068948) | |
| 36-164, gnl|Mm7|chr2 (166621818-166621946) | |
| 286-460, gnl|bosTau2|chr13 (57432784-57432958) | |
| 286-460, gnl|Hg17|chr20 (47075253-47075427) | |
| 286-460, gnl|Mm7|chr2 (166630919-166631093) | |
| 598-708, gnl|bosTau2|chr13 (57436717-57436827) | |
| 598-708, gnl|canFam2|chr24 (38717710-38717875) | |
| 598-708, gnl|danRer3|chr5 (41010212-41010367) | |
| 598-708, gnl|dasNov1|scaffold_20628 (5151-5314) | |
| 598-708, gnl|echTel1|scaffold_293921 (8589-8457) | |
| 598-708, gnl|fr1|chrUn (87686929-87687091) | |
| 598-708, gnl|galGal2|chr20 (6131242-6131378) | |
| 598-708, gnl|hg17|chr20 (47081986-47082154) | |
| 598-708, gnl|Hg17|chr20 (47081993-47082103) | |
| 598-708, gnl|loxAfr1|scaffold_5759 (33597-33453) | |
| 598-708, gnl|mm7|chr2 (166634148-166634297) | |
| 598-708, gnl|Mm7|chr2 (166634155-166634265) | |
| 598-708, gnl|monDom2|scaffold_1 (160288342-160288501) | |
| 598-708, gnl|oryCun1|scaffold_143950 (5730-5858) | |
| 598-708, gnl|panTro1|chr21_random (14211534-14211366) | |
| 598-708, gnl|rheMac2|chr10 (15459201-15459035) | |
| 598-708, gnl|rn3|chr3 (157955935-157956073) | |
| 598-708, gnl|tetNig1|chr6 (2460794-2460928) | |
| 598-708, gnl|xenTro1|scaffold_184 (909047-908892) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| spl (0.143184) | |
| nmm (0.132802) |