Non-Coding RNA Search

Ss1.1-Pig3-SRG8020L13.3

Sequence:


               
               CTTCTCAAACCAACAGTGGCCTCTCAGAACCAGAGTCTTCCTGTTGCCAAACTCCCACCT
AACAAGTTAGTGTCTGATGACTTGGATTCATCCTTAGCCAACCTTGTGGGGAATCTTGGC
ATTGGAAATGGAACCACTAAGAATGATGTAAATTGGAGTCAGCCAGGTGAAAAGAAGCTG
ACTGGAGGATCTAACTGGCAACCAAAGGTTGCCCCAACAACTGCCTGGAATGCTGCAACA
ATGGCACCCCCTGTAATGGCCTATCCTGCTACTACACCAACAGGAATGATAGGATATGGA
ATTCCTCCTCAAATGGGAAGTGTACCTGTAATGACACAACCAACCTTAATATACAGCCAG
CCTGTCATGAGACCACCAAACCCTTTTGGCCCTGTATCAGGAGCACAGATACAGTTTATG
TAACTAGATGGAAGAGAATGGAATTATTCCAAAAAGACAAGTGCTCAAGCAGCAAATACT
TACTTCCAGCAAAATCCAAACTGCTGTCTCTTAAACTCTCTTCTTCCATTAGAATGCTAC
AGTAACCCAGTGAAGGCCCATGAAGGAAATTGGGACTAGTTTATAGGAGAACGTATGAAT
ACAGTTTATAAAAGCCAAGAATTGCCATGTTTTCAGACTAAAAAATCCGTCTTTTTGGTG
ACTAACCCGTCAATTCTTTCAACTCCTATTAATACCCGTAATCAGTAACCTACCAAGAAA
AGCCCTTATTTGGAAAGTATGAAATTCATATTTGGAAAAGCTGCCTGGAGAGAAGAGCTG
TGTCCTTTACTGTAATGCAACAGGACTCTTTGGGGAGGATCAAATCATAATTCTTAATTA
TGCAGTATCTTTCTTTTCTCCAGTCCTCACAGACACAGAAACAGTAACTAAAATTAACTT
TTCTTTTTAAAAAATTATATATTCAGTTTGCAGTAGACATTCCTTAAGTATTTGTATTTA
TTTATGATTATCAATTTACTTAACATTAATATTGTATCAAACCTCCTTAAGAAAATGAGT
ATGGATGTACACAGTATGTTTGATTTTTATCCACAAGAATGAATCTGATTCAGAATGCTT
TTCAGCTGACATACAGAGCACTAAATATTTTAAGGCAAGTCCATAGGTCTGAATCGCTTA
AGAATTCTCAGTCTCTATGGGATTTAGGGAAGCATTATAAATGCATTAATCCTTATAGTC
AATTCTGTGCCTAGGATTTTGCAAGGGAACAGTTCACTGACTAGGAAAAGCACTACATTT
TAAATTCAGCATTAGTGCATTGGGAAGGAACTTTACTGCTTTGTGCTTGGCATGTCATTA
TTTTCCATTTGACATTAGGGCCTTTCCAAAATGAATGTGAGGAATTGCTTTCACTTCAAG
ACTTTCCTTCTTTTCAGTAAAACTCTAGGAGGTGTTATGGGGGGGAGGGAAGGGGACAAA
ATCCTTGAACCTTTTATTTGGCTCATGCCATGTTATGATCATGTACCTTTTAAATAAGGG
GAAATAGTATCTTTAAAGTTAATGTCTAGCCAAGAGTTTAGTTAACGAAGAATTAAACTG
CACTGTTGATCGGTGCTTTGTGTAAATACATCTTAACGTTTGGGTTGAGCGGGGCCTTAA
GAAGGACAGTTCATTGTAGGAAAGCAATTCTGTACATGAGTTTAAGCATACTTGTTGCAT
TGTCTCTGCAGATTCTATTTTTGTTTACAATATTAAAATGTATGTTAGCAAAAATGGGTG
GATTTTCAAATAAAATGCAGCTTCCACAAAACTTTCGTTATGGTATTCTGGTCTGAGGTG
CATTTTCTTTTTCTCTTTTTTCTTATCATTGGTATTATTACTTTTTGCTAATAAAAGTAT
ACCCAGGTGATTATATTTGATGATTTAATAAAATGTAAAATTTTTTTGTTTTAACTTAAT
TTCCAAAAGCTTTATCTTTGTATTTTTGTTAACCTTCTAGACTCTTATTGGTAAACTGAA
CTGCTTATTAAAATTGTTCATTTTGTCTTTGATCAGATGCCTTCAGTCACGTAAGTATAA
GGGAGAAAATGCTTTTGAGTTTGACATATTGATGCATGTGATTATGTCTGCCAAAGAAAC
CTCTGAGTGTGTTATGTTTCATATTGAATAATAAGTAGTATTCAGAGTACTTGATAGTGG
GACTAAAAGCTTTGCATTGATAAATGTCTGCATACTGTTTGCCGTGGTTGGAAAAAAATA
GTCTTTAAGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTCAAACCAACAGTGGCCTCTCAGAACCAGAGTCTTCCTGTTGCCAAACTCCCACCT
AACAAGTTAGTGTCTGATGACTTGGATTCATCCTTAGCCAACCTTGTGGGGAATCTTGGC
ATTGGAAATGGAACCACTAAGAATGATGTAAATTGGAGTCAGCCAGGTGAAAAGAAGCTG
ACTGGAGGATCTAACTGGCAACCAAAGGTTGCCCCAACAACTGCCTGGAATGCTGCAACA
ATGGCACCCCCTGTAATGGCCTATCCTGCTACTACACCAACAGGAATGATAGGATATGGA
ATTCCTCCTCAAATGGGAAGTGTACCTGTAATGACACAACCAACCTTAATATACAGCCAG
CCTGTCATGAGACCACCAAACCCTTTTGGCCCTGTATCAGGAGCACAGATACAGTTTATG
TAACTAGATGGAAGAGAATGGAATTATTCCAAAAAGACAAGTGCTCAAGCAGCAAATACT
TACTTCCAGCAAAATCCAAACTGCTGTCTCTTAAACTCTCTTCTTCCATTAGAATGCTAC
AGTAACCCAGTGAAGGCCCATGAAGGAAATTGGGACTAGTTTATAGGAGAACGTATGAAT
ACAGTTTATAAAAGCCAAGAATTGCCATGTTTTCAGACTAAAAAATCCGTCTTTTTGGTG
ACTAACCCGTCAATTCTTTCAACTCCTATTAATACCCGTAATCAGTAACCTACCAAGAAA
AGCCCTTATTTGGAAAGTATGAAATTCATATTTGGAAAAGCTGCCTGGAGAGAAGAGCTG
TGTCCTTTACTGTAATGCAACAGGACTCTTTGGGGAGGATCAAATCATAATTCTTAATTA
TGCAGTATCTTTCTTTTCTCCAGTCCTCACAGACACAGAAACAGTAACTAAAATTAACTT
TTCTTTTTAAAAAATTATATATTCAGTTTGCAGTAGACATTCCTTAAGTATTTGTATTTA
TTTATGATTATCAATTTACTTAACATTAATATTGTATCAAACCTCCTTAAGAAAATGAGT
ATGGATGTACACAGTATGTTTGATTTTTATCCACAAGAATGAATCTGATTCAGAATGCTT
TTCAGCTGACATACAGAGCACTAAATATTTTAAGGCAAGTCCATAGGTCTGAATCGCTTA
AGAATTCTCAGTCTCTATGGGATTTAGGGAAGCATTATAAATGCATTAATCCTTATAGTC
AATTCTGTGCCTAGGATTTTGCAAGGGAACAGTTCACTGACTAGGAAAAGCACTACATTT
TAAATTCAGCATTAGTGCATTGGGAAGGAACTTTACTGCTTTGTGCTTGGCATGTCATTA
TTTTCCATTTGACATTAGGGCCTTTCCAAAATGAATGTGAGGAATTGCTTTCACTTCAAG
ACTTTCCTTCTTTTCAGTAAAACTCTAGGAGGTGTTATGGGGGGGAGGGAAGGGGACAAA
ATCCTTGAACCTTTTATTTGGCTCATGCCATGTTATGATCATGTACCTTTTAAATAAGGG
GAAATAGTATCTTTAAAGTTAATGTCTAGCCAAGAGTTTAGTTAACGAAGAATTAAACTG
CACTGTTGATCGGTGCTTTGTGTAAATACATCTTAACGTTTGGGTTGAGCGGGGCCTTAA
GAAGGACAGTTCATTGTAGGAAAGCAATTCTGTACATGAGTTTAAGCATACTTGTTGCAT
TGTCTCTGCAGATTCTATTTTTGTTTACAATATTAAAATGTATGTTAGCAAAAATGGGTG
GATTTTCAAATAAAATGCAGCTTCCACAAAACTTTCGTTATGGTATTCTGGTCTGAGGTG
CATTTTCTTTTTCTCTTTTTTCTTATCATTGGTATTATTACTTTTTGCTAATAAAAGTAT
ACCCAGGTGATTATATTTGATGATTTAATAAAATGTAAAATTTTTTTGTTTTAACTTAAT
TTCCAAAAGCTTTATCTTTGTATTTTTGTTAACCTTCTAGACTCTTATTGGTAAACTGAA
CTGCTTATTAAAATTGTTCATTTTGTCTTTGATCAGATGCCTTCAGTCACGTAAGTATAA
GGGAGAAAATGCTTTTGAGTTTGACATATTGATGCATGTGATTATGTCTGCCAAAGAAAC
CTCTGAGTGTGTTATGTTTCATATTGAATAATAAGTAGTATTCAGAGTACTTGATAGTGG
GACTAAAAGCTTTGCATTGATAAATGTCTGCATACTGTTTGCCGTGGTTGGAAAAAAATA
GTCTTTAAGCAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|3139029|gb|AAC16711.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3139029|gb|AAC16711.1|

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               406-515, - strand, RNAz p=0.981614
               

               
               753-872, - strand, RNAz p=0.801831
               

               
               1106-1225, - strand, RNAz p=0.766046
               

               
               1265-1463, - strand, RNAz p=0.805165

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               406-515, - strand, RNAz p=0.981614
               

               
               753-872, - strand, RNAz p=0.801831
               

               
               1106-1225, - strand, RNAz p=0.766046
               

               
               1265-1463, - strand, RNAz p=0.805165

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               144-244, gnl|bosTau2|chr29 (4924340-4924240)
               

               
               144-244, gnl|Hg17|chr11 (85369919-85369819)
               

               
               144-244, gnl|Mm7|chr7 (86198540-86198640)
               


               
               406-2228, gnl|bosTau2|chr29 (4903986-4902163)
               

               
               406-2228, gnl|Hg17|chr11 (85347754-85345922)
               

               
               406-2228, gnl|Mm7|chr7 (86214466-86216265)
               


               
               1448-1771, gnl|bosTau2|chr11 (69172723-69173046)
               

               
               1448-1771, gnl|Hg17|chr11 (85346698-85346375)
               

               
               1448-1771, gnl|Mm7|chr7 (86215496-86215816)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-244, gnl|bosTau2|chr29 (4924340-4924240)
               

               
               144-244, gnl|Hg17|chr11 (85369919-85369819)
               

               
               144-244, gnl|Mm7|chr7 (86198540-86198640)
               


               
               406-2228, gnl|bosTau2|chr29 (4903986-4902163)
               

               
               406-2228, gnl|Hg17|chr11 (85347754-85345922)
               

               
               406-2228, gnl|Mm7|chr7 (86214466-86216265)
               


               
               1448-1771, gnl|bosTau2|chr11 (69172723-69173046)
               

               
               1448-1771, gnl|Hg17|chr11 (85346698-85346375)
               

               
               1448-1771, gnl|Mm7|chr7 (86215496-86215816)

Expressed library(ies): 45 entry(ies)

More info

Expressed library(ies): 45 entry(ies)

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               fat (0.884564)
               

               
               tra (0.738552)
               

               
               spl (0.715922)
               

               
               gul (0.710353)
               

               
               sin (0.69979)
               

               
               cty (0.62448)
               

               
               liv (0.585137)
               

               
               rec (0.519211)
               

               
               ece (0.45861)
               

               
               lin (0.436808)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               col (0.390016)
               

               
               eye (0.341006)
               

               
               lun (0.300978)
               

               
               ski (0.29347)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.884564)
               

               
               tra (0.738552)
               

               
               spl (0.715922)
               

               
               gul (0.710353)
               

               
               sin (0.69979)
               

               
               cty (0.62448)
               

               
               liv (0.585137)
               

               
               rec (0.519211)
               

               
               ece (0.45861)
               

               
               lin (0.436808)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               col (0.390016)
               

               
               eye (0.341006)
               

               
               lun (0.300978)
               

               
               ski (0.29347)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	406-515, - strand, RNAz p=0.981614
	753-872, - strand, RNAz p=0.801831
	1106-1225, - strand, RNAz p=0.766046
	1265-1463, - strand, RNAz p=0.805165

	144-244, gnl\|bosTau2\|chr29 (4924340-4924240)
	144-244, gnl\|Hg17\|chr11 (85369919-85369819)
	144-244, gnl\|Mm7\|chr7 (86198540-86198640)

	406-2228, gnl\|bosTau2\|chr29 (4903986-4902163)
	406-2228, gnl\|Hg17\|chr11 (85347754-85345922)
	406-2228, gnl\|Mm7\|chr7 (86214466-86216265)

	1448-1771, gnl\|bosTau2\|chr11 (69172723-69173046)
	1448-1771, gnl\|Hg17\|chr11 (85346698-85346375)
	1448-1771, gnl\|Mm7\|chr7 (86215496-86215816)

	fat (0.884564)
	tra (0.738552)
	spl (0.715922)
	gul (0.710353)
	sin (0.69979)
	cty (0.62448)
	liv (0.585137)
	rec (0.519211)
	ece (0.45861)
	lin (0.436808)
	hea (0.408998)
	aor (0.390549)
	col (0.390016)
	eye (0.341006)
	lun (0.300978)
	ski (0.29347)
	fce (0.271592)
	ret (0.257467)
	sug (0.254582)
	bla (0.248694)
	eru (0.240096)
	cbe (0.239234)
	pan (0.23596)
	spc (0.226732)
	tes (0.207814)
	fli (0.202881)
	cmu (0.186393)
	nep (0.183925)
	sag (0.182715)
	fbs (0.175346)
	mga (0.160205)
	eli (0.151814)
	isp (0.150376)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	clu (0.119646)
	pgl (0.118483)
	med (0.116252)