Ss1.1-Pig3-SRG8020N11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCAAGTTCAAGATGGAAGAGCAACTGGCCATTCCACTCTTGTTCTCATTGGCGATGTCT ATAAAAAGCTCCAGAAAGAAGCTGAATTCCAGCGGCAAGAATGGATCAGGAAACAAGGTC CACATTTCGCTGAGTATTTGAGCTGGGAAGTGACTGGTGAATGTAATGTGCTATTGAAAT GCAAGGTGGCAAATATTAAGAAAGAGACTCATATTGTGTGGTACAAAGATGAGAGGGAAA TATCAGTGGATGAAAAGCATGACTTTAAGGATGGTATATGTACCCTCCTTATAACAGAGT TTTCCAAGAAAGATGCTGGGATCTATGAAGTTATCCTGAAGGACGACAGAGGAAAAGACA AGAGCAGACTGAAGCTCGTGGATGAAGCCTTTAAAGAACTGATGACTGAAGTATGTAAAA CAATTGCTCTGTCTGCTACTGACCTGAAGATACAGAGCACAGCTGAGGGCATTCGGCTGT ACTCTTTTGTCACTTACTATGTGGATGATCTAAAAGTTAACTGGTCCCACAATGGGGCCG CTATTAAGTACACAGACAGAGTTAAGAGTGGGGTCACCGGGGAGCAGATTTGGCTGCAGA TCAACGAACCCACTCCAAATGACAAAGGGAAGTACGTGATGGAGCTCTTTGATGGCAAAA CTGGACACCAGAAGATGGTGGACCTTTCTGGACAAGCATACGAGGAAGCCTTTGCTGAAT TCCAGAGATTAAAACAAGCTGCCATTGCCGAGAAAAATCGTGCTCGGGTGGTGGGCGGTC TCCCCGACGTGGTCACCATCCAGGAGGGCAAGGCGCTTAATCTCACATGCATCGTATGGG GCGACCCGACTCCGGAGGTGTCCTGGCTGAAGAACGAGAAGCTCCTGGCCTCGGACGAGC ACTGCAACCTCAGGTTCGAGGCCGGCAAGACCGCCTACTTCACCATCAGCGGGGTGAGGA CCTCCGACTCGGGCAGGTATGGGCTGGTCGTGAAGAACAAGTACGGCTCGGAGACCAGCG ACTTCACCGTCAGTGTGTTCATCCCAGAGGAGGAGGCGCGGCAGGGGGTCGAGGAGCCCC CAAAGGGCCACAAGGGCAACAAGAAGTCCCCGTGAGCAGGGAAGGAGGTGGGTGAGGGGG CGGGCCGGGAGCTGCCTCGAGTTCGTGTCTCCGAGCTCCCTACTCCCTGTTTTTGTGCTG GCTTGGGGAGAAATTGTCCAATCTTTTATGCATATAGGAAGGCATCGACTAACGACATTT AATCATTTTTCTCTATCTACAAATTATGTGTTAAGGAAATAACGTTTGTAGCACAAATAC TAGGAAAGAGTTTTAAGGAAAATGCCAGAATAAAGTCAGAGGGACGTCGTATGGTGGTCG GAGGCATGTGTTGTGGAACAGAGTTTGGACTTGGCCGATTTGCACTGGTCGACTTTCCCG GTTGGCAGTGACGCGTCAGCATCCGCTGGGGAGAAGACACGTTGTTAAGCCAGCCCCTGT GTGCGTGTGGCTCTGGGAGTGGTGTGCGCTCCGGGCGCGGCCTTGCGCTCTGGAACCTCT CGGTCCTAATAAACAGTTCACCCCTCCTCTTCCCGTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCAAGTTCAAGATGGAAGAGCAACTGGCCATTCCACTCTTGTTCTCATTGGCGATGTCT ATAAAAAGCTCCAGAAAGAAGCTGAATTCCAGCGGCAAGAATGGATCAGGAAACAAGGTC CACATTTCGCTGAGTATTTGAGCTGGGAAGTGACTGGTGAATGTAATGTGCTATTGAAAT GCAAGGTGGCAAATATTAAGAAAGAGACTCATATTGTGTGGTACAAAGATGAGAGGGAAA TATCAGTGGATGAAAAGCATGACTTTAAGGATGGTATATGTACCCTCCTTATAACAGAGT TTTCCAAGAAAGATGCTGGGATCTATGAAGTTATCCTGAAGGACGACAGAGGAAAAGACA AGAGCAGACTGAAGCTCGTGGATGAAGCCTTTAAAGAACTGATGACTGAAGTATGTAAAA CAATTGCTCTGTCTGCTACTGACCTGAAGATACAGAGCACAGCTGAGGGCATTCGGCTGT ACTCTTTTGTCACTTACTATGTGGATGATCTAAAAGTTAACTGGTCCCACAATGGGGCCG CTATTAAGTACACAGACAGAGTTAAGAGTGGGGTCACCGGGGAGCAGATTTGGCTGCAGA TCAACGAACCCACTCCAAATGACAAAGGGAAGTACGTGATGGAGCTCTTTGATGGCAAAA CTGGACACCAGAAGATGGTGGACCTTTCTGGACAAGCATACGAGGAAGCCTTTGCTGAAT TCCAGAGATTAAAACAAGCTGCCATTGCCGAGAAAAATCGTGCTCGGGTGGTGGGCGGTC TCCCCGACGTGGTCACCATCCAGGAGGGCAAGGCGCTTAATCTCACATGCATCGTATGGG GCGACCCGACTCCGGAGGTGTCCTGGCTGAAGAACGAGAAGCTCCTGGCCTCGGACGAGC ACTGCAACCTCAGGTTCGAGGCCGGCAAGACCGCCTACTTCACCATCAGCGGGGTGAGGA CCTCCGACTCGGGCAGGTATGGGCTGGTCGTGAAGAACAAGTACGGCTCGGAGACCAGCG ACTTCACCGTCAGTGTGTTCATCCCAGAGGAGGAGGCGCGGCAGGGGGTCGAGGAGCCCC CAAAGGGCCACAAGGGCAACAAGAAGTCCCCGTGAGCAGGGAAGGAGGTGGGTGAGGGGG CGGGCCGGGAGCTGCCTCGAGTTCGTGTCTCCGAGCTCCCTACTCCCTGTTTTTGTGCTG GCTTGGGGAGAAATTGTCCAATCTTTTATGCATATAGGAAGGCATCGACTAACGACATTT AATCATTTTTCTCTATCTACAAATTATGTGTTAAGGAAATAACGTTTGTAGCACAAATAC TAGGAAAGAGTTTTAAGGAAAATGCCAGAATAAAGTCAGAGGGACGTCGTATGGTGGTCG GAGGCATGTGTTGTGGAACAGAGTTTGGACTTGGCCGATTTGCACTGGTCGACTTTCCCG GTTGGCAGTGACGCGTCAGCATCCGCTGGGGAGAAGACACGTTGTTAAGCCAGCCCCTGT GTGCGTGTGGCTCTGGGAGTGGTGTGCGCTCCGGGCGCGGCCTTGCGCTCTGGAACCTCT CGGTCCTAATAAACAGTTCACCCCTCCTCTTCCCGTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 171-299, gnl|bosTau2|chr24 (26888470-26888598) | |
| 171-299, gnl|canFam2|chr7 (72758214-72758380) | |
| 171-299, gnl|danRer3|chr2 (9180576-9180410) | |
| 171-299, gnl|dasNov1|scaffold_18051 (55472-55336) | |
| 171-299, gnl|echTel1|scaffold_303134 (58672-58837) | |
| 171-299, gnl|fr1|chrUn (3078678-3078799) | |
| 171-299, gnl|galGal2|chr2 (100805585-100805740) | |
| 171-299, gnl|hg17|chr18 (3076025-3076191) | |
| 171-299, gnl|Hg17|chr18 (3076164-3076036) | |
| 171-299, gnl|loxAfr1|scaffold_31966 (4076-3911) | |
| 171-299, gnl|mm7|chr17 (69389216-69389051) | |
| 171-299, gnl|Mm7|chr17 (69389075-69389203) | |
| 171-299, gnl|monDom2|scaffold_21 (31348147-31347998) | |
| 171-299, gnl|oryCun1|scaffold_170197 (401-236) | |
| 171-299, gnl|panTro1|chr17 (9684482-9684316) | |
| 171-299, gnl|rheMac2|chr18 (11085110-11084944) | |
| 171-299, gnl|rn3|chr9 (110531583-110531413) | |
| 171-299, gnl|tetNig1|chr6 (4534406-4534511) | |
| 171-299, gnl|xenTro1|scaffold_460 (1025853-1025988) | |
| 529-696, gnl|bosTau2|chr24 (26895839-26896006) | |
| 529-696, gnl|canFam2|chr7 (72752561-72752731) | |
| 529-696, gnl|danRer3|chr2 (22887209-22887059) | |
| 529-696, gnl|dasNov1|scaffold_473 (4486-4316) | |
| 529-696, gnl|echTel1|scaffold_303134 (49907-50077) | |
| 529-696, gnl|fr1|chrUn (3077313-3077483) | |
| 529-696, gnl|galGal2|chr2 (100802257-100802427) | |
| 529-696, gnl|hg17|chr18 (3069174-3069344) | |
| 529-696, gnl|Hg17|chr18 (3069344-3069177) | |
| 529-696, gnl|loxAfr1|scaffold_31966 (12857-12687) | |
| 529-696, gnl|mm7|chr17 (69396825-69396655) | |
| 529-696, gnl|Mm7|chr17 (69396653-69396820) | |
| 529-696, gnl|monDom2|scaffold_21 (31358284-31358114) | |
| 529-696, gnl|oryCun1|scaffold_212222 (192095-191925) | |
| 529-696, gnl|panTro1|chr17 (9691318-9691148) | |
| 529-696, gnl|rheMac2|chr18 (11090214-11090044) | |
| 529-696, gnl|rn3|chr9 (110541345-110541175) | |
| 529-696, gnl|tetNig1|chr6 (4533066-4533226) | |
| 529-696, gnl|xenTro1|scaffold_460 (1022090-1022260) | |
| 811-1159, gnl|bosTau2|chr24 (26902958-26903297) | |
| 811-1159, gnl|Hg17|chr18 (3057555-3057243) | |
| 811-1159, gnl|Mm7|chr17 (69405437-69405765) | |
| 1200-1594, gnl|bosTau2|chr24 (26903385-26903776) | |
| 1200-1594, gnl|canFam2|chr7 (72742912-72743241) | |
| 1200-1594, gnl|dasNov1|scaffold_473 (14762-14450) | |
| 1200-1594, gnl|echTel1|scaffold_303134 (41492-41782) | |
| 1200-1594, gnl|hg17|chr18 (3056808-3057069) | |
| 1200-1594, gnl|Hg17|chr18 (3057149-3056809) | |
| 1200-1594, gnl|loxAfr1|scaffold_31966 (22775-22453) | |
| 1200-1594, gnl|mm7|chr17 (69406224-69405938) | |
| 1200-1594, gnl|Mm7|chr17 (69405860-69406219) | |
| 1200-1594, gnl|monDom2|scaffold_21 (31367880-31367554) | |
| 1200-1594, gnl|oryCun1|scaffold_212222 (202167-201858) | |
| 1200-1594, gnl|panTro1|chr17 (9703701-9703440) | |
| 1200-1594, gnl|rheMac2|chr18 (11099665-11099404) | |
| 1200-1594, gnl|rn3|chr9 (110550496-110550229) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 171-299, gnl|bosTau2|chr24 (26888470-26888598) | |
| 171-299, gnl|canFam2|chr7 (72758214-72758380) | |
| 171-299, gnl|danRer3|chr2 (9180576-9180410) | |
| 171-299, gnl|dasNov1|scaffold_18051 (55472-55336) | |
| 171-299, gnl|echTel1|scaffold_303134 (58672-58837) | |
| 171-299, gnl|fr1|chrUn (3078678-3078799) | |
| 171-299, gnl|galGal2|chr2 (100805585-100805740) | |
| 171-299, gnl|hg17|chr18 (3076025-3076191) | |
| 171-299, gnl|Hg17|chr18 (3076164-3076036) | |
| 171-299, gnl|loxAfr1|scaffold_31966 (4076-3911) | |
| 171-299, gnl|mm7|chr17 (69389216-69389051) | |
| 171-299, gnl|Mm7|chr17 (69389075-69389203) | |
| 171-299, gnl|monDom2|scaffold_21 (31348147-31347998) | |
| 171-299, gnl|oryCun1|scaffold_170197 (401-236) | |
| 171-299, gnl|panTro1|chr17 (9684482-9684316) | |
| 171-299, gnl|rheMac2|chr18 (11085110-11084944) | |
| 171-299, gnl|rn3|chr9 (110531583-110531413) | |
| 171-299, gnl|tetNig1|chr6 (4534406-4534511) | |
| 171-299, gnl|xenTro1|scaffold_460 (1025853-1025988) | |
| 529-696, gnl|bosTau2|chr24 (26895839-26896006) | |
| 529-696, gnl|canFam2|chr7 (72752561-72752731) | |
| 529-696, gnl|danRer3|chr2 (22887209-22887059) | |
| 529-696, gnl|dasNov1|scaffold_473 (4486-4316) | |
| 529-696, gnl|echTel1|scaffold_303134 (49907-50077) | |
| 529-696, gnl|fr1|chrUn (3077313-3077483) | |
| 529-696, gnl|galGal2|chr2 (100802257-100802427) | |
| 529-696, gnl|hg17|chr18 (3069174-3069344) | |
| 529-696, gnl|Hg17|chr18 (3069344-3069177) | |
| 529-696, gnl|loxAfr1|scaffold_31966 (12857-12687) | |
| 529-696, gnl|mm7|chr17 (69396825-69396655) | |
| 529-696, gnl|Mm7|chr17 (69396653-69396820) | |
| 529-696, gnl|monDom2|scaffold_21 (31358284-31358114) | |
| 529-696, gnl|oryCun1|scaffold_212222 (192095-191925) | |
| 529-696, gnl|panTro1|chr17 (9691318-9691148) | |
| 529-696, gnl|rheMac2|chr18 (11090214-11090044) | |
| 529-696, gnl|rn3|chr9 (110541345-110541175) | |
| 529-696, gnl|tetNig1|chr6 (4533066-4533226) | |
| 529-696, gnl|xenTro1|scaffold_460 (1022090-1022260) | |
| 811-1159, gnl|bosTau2|chr24 (26902958-26903297) | |
| 811-1159, gnl|Hg17|chr18 (3057555-3057243) | |
| 811-1159, gnl|Mm7|chr17 (69405437-69405765) | |
| 1200-1594, gnl|bosTau2|chr24 (26903385-26903776) | |
| 1200-1594, gnl|canFam2|chr7 (72742912-72743241) | |
| 1200-1594, gnl|dasNov1|scaffold_473 (14762-14450) | |
| 1200-1594, gnl|echTel1|scaffold_303134 (41492-41782) | |
| 1200-1594, gnl|hg17|chr18 (3056808-3057069) | |
| 1200-1594, gnl|Hg17|chr18 (3057149-3056809) | |
| 1200-1594, gnl|loxAfr1|scaffold_31966 (22775-22453) | |
| 1200-1594, gnl|mm7|chr17 (69406224-69405938) | |
| 1200-1594, gnl|Mm7|chr17 (69405860-69406219) | |
| 1200-1594, gnl|monDom2|scaffold_21 (31367880-31367554) | |
| 1200-1594, gnl|oryCun1|scaffold_212222 (202167-201858) | |
| 1200-1594, gnl|panTro1|chr17 (9703701-9703440) | |
| 1200-1594, gnl|rheMac2|chr18 (11099665-11099404) | |
| 1200-1594, gnl|rn3|chr9 (110550496-110550229) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| che (0.68157) | |
| hlv (0.417769) | |
| hea (0.408998) | |
| ldo (0.38801) | |
| vin (0.332557) | |
| ssp (0.271039) | |
| nms (0.213858) | |
| gul (0.177588) | |
| ton (0.1755) | |
| eye (0.170503) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| ese (0.126502) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.68157) | |
| hlv (0.417769) | |
| hea (0.408998) | |
| ldo (0.38801) | |
| vin (0.332557) | |
| ssp (0.271039) | |
| nms (0.213858) | |
| gul (0.177588) | |
| ton (0.1755) | |
| eye (0.170503) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| ese (0.126502) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) |