Non-Coding RNA Search

Ss1.1-Pig3-SRG8020O03.5

Sequence:


               
               TAAAGGCAGAGTGTTCAGTTCCCAGTGGAGTCTGGAAGCCCCAAGTGTATATTGGGGTCT
TGTCAGTAGGGTTGTGTGATTTCGGCCAGCAGTGAGAGGGATCCAGGAAGCATTTCGTTG
GCTGGGCTTGGGATTGGGAGGACAGGCTGGATCCCAAAGGGCAGAAAACAGGCACGAGCG
ACTGACATGGTAGTCTTCGTCAGCTGGGAAGGGAGCCACCCAGGGGGTGATATGCTGGGA
GAAGATACAGCGGCCAAGGGCTTGGAGACTAGGATGAAATCAGAGAACTGTGGTCCCCAG
CCTCCCCCCGCCCCACATCTTCCCAACACACTGCCCAGAGCCAAGGCCACCCCGCTTCTC
TCCTCTCTGTGCTCCCTTAACCTTTCCGGCCCTGCCTTCTAGTTCGCTCCCAGGACCCTG
GACAGCGGCGGGTGCTGGACCGAGCGGCCCGGCAGCGCCGCATCAACAGGCAGCTCGAGG
CCTTGGAGAATGACAACTTCCAAGAGGGGCCGCACGCATGCCTCCCCCAGCTCGGCAAGA
GGCTGCCTCAGTTTGACGATGATGCAGACACTGGAAAGAAAAAGAAAAAAACTCGAGGTG
ATCATTTTAAACTTCGCTTCCGAAAAAACTTTCAAGCCTTGCTGGAGGAGCANAACCTGA
GCGTGGCTGAAGGCCCCAACTACCTGACGGCCTGTGCAGGACCCCCATCCCGGCCCCAGC
GCCCCTTCTGCGCTGTCTGTGGCTTCCCCTCCCCCTACACCTGTGTCAGCTGTGGTGCCC
AGTACTGCACGGTGCGCTGTCTGGGCACCCACCATGAGACCCGGTGCCTGAAGTGGACTG
TGTGACCCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAGGCAGAGTGTTCAGTTCCCAGTGGAGTCTGGAAGCCCCAAGTGTATATTGGGGTCT
TGTCAGTAGGGTTGTGTGATTTCGGCCAGCAGTGAGAGGGATCCAGGAAGCATTTCGTTG
GCTGGGCTTGGGATTGGGAGGACAGGCTGGATCCCAAAGGGCAGAAAACAGGCACGAGCG
ACTGACATGGTAGTCTTCGTCAGCTGGGAAGGGAGCCACCCAGGGGGTGATATGCTGGGA
GAAGATACAGCGGCCAAGGGCTTGGAGACTAGGATGAAATCAGAGAACTGTGGTCCCCAG
CCTCCCCCCGCCCCACATCTTCCCAACACACTGCCCAGAGCCAAGGCCACCCCGCTTCTC
TCCTCTCTGTGCTCCCTTAACCTTTCCGGCCCTGCCTTCTAGTTCGCTCCCAGGACCCTG
GACAGCGGCGGGTGCTGGACCGAGCGGCCCGGCAGCGCCGCATCAACAGGCAGCTCGAGG
CCTTGGAGAATGACAACTTCCAAGAGGGGCCGCACGCATGCCTCCCCCAGCTCGGCAAGA
GGCTGCCTCAGTTTGACGATGATGCAGACACTGGAAAGAAAAAGAAAAAAACTCGAGGTG
ATCATTTTAAACTTCGCTTCCGAAAAAACTTTCAAGCCTTGCTGGAGGAGCANAACCTGA
GCGTGGCTGAAGGCCCCAACTACCTGACGGCCTGTGCAGGACCCCCATCCCGGCCCCAGC
GCCCCTTCTGCGCTGTCTGTGGCTTCCCCTCCCCCTACACCTGTGTCAGCTGTGGTGCCC
AGTACTGCACGGTGCGCTGTCTGGGCACCCACCATGAGACCCGGTGCCTGAAGTGGACTG
TGTGACCCCTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6IB12_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6IB12_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               316-433, - strand, RNAz p=0.969529

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-433, - strand, RNAz p=0.969529

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               1-574, gnl|bosTau2|chr25 (30491232-30491797)
               

               
               1-574, gnl|Hg17|chr7 (100458968-100459491)
               


               
               650-826, gnl|bosTau2|chr25 (30492443-30492619)
               

               
               650-826, gnl|canFam2|chr6 (11663299-11663133)
               

               
               650-826, gnl|danRer3|chr5 (37062542-37062708)
               

               
               650-826, gnl|dasNov1|scaffold_69675 (5275-5441)
               

               
               650-826, gnl|echTel1|scaffold_255126 (911-745)
               

               
               650-826, gnl|fr1|chrUn (298670145-298670311)
               

               
               650-826, gnl|Hg17|chr7 (100460385-100460561)
               

               
               650-826, gnl|hg17|chr8 (143937025-143937191)
               

               
               650-826, gnl|loxAfr1|scaffold_105736 (7870-7704)
               

               
               650-826, gnl|mm7|chr5 (135953598-135953432)
               

               
               650-826, gnl|Mm7|chr5 (135953601-135953425)
               

               
               650-826, gnl|monDom2|scaffold_66 (3173484-3173650)
               

               
               650-826, gnl|panTro1|chr7 (147249222-147249388)
               

               
               650-826, gnl|rheMac2|chr8 (145408273-145408439)
               

               
               650-826, gnl|rn3|chr6 (17753349-17753498)
               

               
               650-826, gnl|tetNig1|chrUn_random (64057215-64057049)
               

               
               650-826, gnl|xenTro1|scaffold_10 (3120781-3120947)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-574, gnl|bosTau2|chr25 (30491232-30491797)
               

               
               1-574, gnl|Hg17|chr7 (100458968-100459491)
               


               
               650-826, gnl|bosTau2|chr25 (30492443-30492619)
               

               
               650-826, gnl|canFam2|chr6 (11663299-11663133)
               

               
               650-826, gnl|danRer3|chr5 (37062542-37062708)
               

               
               650-826, gnl|dasNov1|scaffold_69675 (5275-5441)
               

               
               650-826, gnl|echTel1|scaffold_255126 (911-745)
               

               
               650-826, gnl|fr1|chrUn (298670145-298670311)
               

               
               650-826, gnl|Hg17|chr7 (100460385-100460561)
               

               
               650-826, gnl|hg17|chr8 (143937025-143937191)
               

               
               650-826, gnl|loxAfr1|scaffold_105736 (7870-7704)
               

               
               650-826, gnl|mm7|chr5 (135953598-135953432)
               

               
               650-826, gnl|Mm7|chr5 (135953601-135953425)
               

               
               650-826, gnl|monDom2|scaffold_66 (3173484-3173650)
               

               
               650-826, gnl|panTro1|chr7 (147249222-147249388)
               

               
               650-826, gnl|rheMac2|chr8 (145408273-145408439)
               

               
               650-826, gnl|rn3|chr6 (17753349-17753498)
               

               
               650-826, gnl|tetNig1|chrUn_random (64057215-64057049)
               

               
               650-826, gnl|xenTro1|scaffold_10 (3120781-3120947)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-574, gnl\|bosTau2\|chr25 (30491232-30491797)
	1-574, gnl\|Hg17\|chr7 (100458968-100459491)

	650-826, gnl\|bosTau2\|chr25 (30492443-30492619)
	650-826, gnl\|canFam2\|chr6 (11663299-11663133)
	650-826, gnl\|danRer3\|chr5 (37062542-37062708)
	650-826, gnl\|dasNov1\|scaffold_69675 (5275-5441)
	650-826, gnl\|echTel1\|scaffold_255126 (911-745)
	650-826, gnl\|fr1\|chrUn (298670145-298670311)
	650-826, gnl\|Hg17\|chr7 (100460385-100460561)
	650-826, gnl\|hg17\|chr8 (143937025-143937191)
	650-826, gnl\|loxAfr1\|scaffold_105736 (7870-7704)
	650-826, gnl\|mm7\|chr5 (135953598-135953432)
	650-826, gnl\|Mm7\|chr5 (135953601-135953425)
	650-826, gnl\|monDom2\|scaffold_66 (3173484-3173650)
	650-826, gnl\|panTro1\|chr7 (147249222-147249388)
	650-826, gnl\|rheMac2\|chr8 (145408273-145408439)
	650-826, gnl\|rn3\|chr6 (17753349-17753498)
	650-826, gnl\|tetNig1\|chrUn_random (64057215-64057049)
	650-826, gnl\|xenTro1\|scaffold_10 (3120781-3120947)