Non-Coding RNA Search

Ss1.1-Pig3-SRG8020O12.5

Sequence:


               
               GCATTATACTAACCCTGCATGCCTTCAGCTTATTTTGTAGATGAATTCCATCACAGCAAC
GTATCCATGAAATTGCCAAAAAGTGTTAAAGTGCCTTGGACCTTTCTCACTAAGTAGTAA
ATTGAAACAGGTATAGACCATGCCAGCCTTCTTATCAATCTCTGGACTGATGTGTATCCT
TGATGAAAGAGATTTGGGACCCTGAAAACTAAACCTTGTCACTCCCCAATAGTTTATAAT
GAATAGTTGCAAAGTCATTTTTAAATGACTTTCTTCCTTTTAGTATCATTTATTCTCTTG
GGAAAGCTAATGAGCAAATTATCCAAGAATTCTTTCTTATTCAAAAAAGTCAGAATATTC
CTCCCTCCCCCCAGAAATCTGAATTAGTTCTCATTCATTTCCAGGAAACATATGAAAGAG
CAAACAGAATTAAAGATGACATGGATTGTCTGATTATTTAGCATGACTAAGATGATGTGA
TTTAATGTGCCTTAAGCAAAAACTTAAACTAGATGCAGAACTTTCACAGCTGGATGTAGC
ATTGAACTATTATAATGTTATCTATGCAGTTACCTACTTTGGTTTTTGCTTTGTCTTTTA
AGCCTCACCTTTGTCATTAATTTAACAGATTTGGGGCTACCTCTCTCTCTACTGGGAATA
TGTGCAATTATGAGACACTCCCCCAAAAAAGGAAGGGAAAAGAAAGAGCTTTCTGAGTAG
CAAATCTTGTGCCATGAAGTAGACGTGACATGAAGATGCAGAGCGGGAGGATAGTAATTT
TCTCTGAGCCGCACACACCAGCTTTTATTTCATGGCTTTGTCACAGGCTTTTCTCCTTCT
GTGCTGTCACCTTTGAGAAAAACGATTGCACCTTCTCCAAGTCTGCCTTTTAACAGCTAC
AGTTGAGTTGGCAAGACTTCCCCAGCTCTGAATATAGCCATTTGCCGACTCCGGCCTCTT
TGCGAGACTGACTCAAATCTGTGATCTTCTGTTCAGCATACACATCAGCAAAGTGAGAAG
ATGAGCGCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTATACTAACCCTGCATGCCTTCAGCTTATTTTGTAGATGAATTCCATCACAGCAAC
GTATCCATGAAATTGCCAAAAAGTGTTAAAGTGCCTTGGACCTTTCTCACTAAGTAGTAA
ATTGAAACAGGTATAGACCATGCCAGCCTTCTTATCAATCTCTGGACTGATGTGTATCCT
TGATGAAAGAGATTTGGGACCCTGAAAACTAAACCTTGTCACTCCCCAATAGTTTATAAT
GAATAGTTGCAAAGTCATTTTTAAATGACTTTCTTCCTTTTAGTATCATTTATTCTCTTG
GGAAAGCTAATGAGCAAATTATCCAAGAATTCTTTCTTATTCAAAAAAGTCAGAATATTC
CTCCCTCCCCCCAGAAATCTGAATTAGTTCTCATTCATTTCCAGGAAACATATGAAAGAG
CAAACAGAATTAAAGATGACATGGATTGTCTGATTATTTAGCATGACTAAGATGATGTGA
TTTAATGTGCCTTAAGCAAAAACTTAAACTAGATGCAGAACTTTCACAGCTGGATGTAGC
ATTGAACTATTATAATGTTATCTATGCAGTTACCTACTTTGGTTTTTGCTTTGTCTTTTA
AGCCTCACCTTTGTCATTAATTTAACAGATTTGGGGCTACCTCTCTCTCTACTGGGAATA
TGTGCAATTATGAGACACTCCCCCAAAAAAGGAAGGGAAAAGAAAGAGCTTTCTGAGTAG
CAAATCTTGTGCCATGAAGTAGACGTGACATGAAGATGCAGAGCGGGAGGATAGTAATTT
TCTCTGAGCCGCACACACCAGCTTTTATTTCATGGCTTTGTCACAGGCTTTTCTCCTTCT
GTGCTGTCACCTTTGAGAAAAACGATTGCACCTTCTCCAAGTCTGCCTTTTAACAGCTAC
AGTTGAGTTGGCAAGACTTCCCCAGCTCTGAATATAGCCATTTGCCGACTCCGGCCTCTT
TGCGAGACTGACTCAAATCTGTGATCTTCTGTTCAGCATACACATCAGCAAAGTGAGAAG
ATGAGCGCTAAA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-154, gnl|bosTau2|chr1 (49001999-49002153)
               

               
               1-154, gnl|Hg17|chr3 (190088037-190088194)
               

               
               1-154, gnl|Mm7|chr16 (24649911-24650055)
               


               
               226-1032, gnl|bosTau2|chr1 (49002188-49002976)
               

               
               226-1032, gnl|Hg17|chr3 (190088238-190089069)
               

               
               226-1032, gnl|Mm7|chr16 (24650133-24650917)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-154, gnl|bosTau2|chr1 (49001999-49002153)
               

               
               1-154, gnl|Hg17|chr3 (190088037-190088194)
               

               
               1-154, gnl|Mm7|chr16 (24649911-24650055)
               


               
               226-1032, gnl|bosTau2|chr1 (49002188-49002976)
               

               
               226-1032, gnl|Hg17|chr3 (190088238-190089069)
               

               
               226-1032, gnl|Mm7|chr16 (24650133-24650917)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	1-154, gnl\|bosTau2\|chr1 (49001999-49002153)
	1-154, gnl\|Hg17\|chr3 (190088037-190088194)
	1-154, gnl\|Mm7\|chr16 (24649911-24650055)

	226-1032, gnl\|bosTau2\|chr1 (49002188-49002976)
	226-1032, gnl\|Hg17\|chr3 (190088238-190089069)
	226-1032, gnl\|Mm7\|chr16 (24650133-24650917)