Non-Coding RNA Search

Ss1.1-Pig3-SRG8020P18.3.5

Sequence:


               
               GCTGGGTGGGCCACAGAACCTGCGATTCCAAGAGGGAGTGTGCCCAAAGGACTTATGGGG
ATACCTGGAAGGGAGCTTGGGGTGGGGGGCTGTTGTGACCCTTACGCAGTCTGGGTGGTT
GTCTGTCTGTCCGTCTTCAGTCTCGAAGCAGGTCTTCCCAGTGCCCTTTTCCTCCTTGCC
TTTTTACCCCCATTATTTCCCATGGGCCAGCATAATTTTGTTTTTTCTAATTTATAGTCA
CTGTTCTAGACAGACCAAAGAGAAGGAACAGTGGTGGAGTCTAGGCTGCTGATGAGTAAG
CTTTATCGAGCACCTGAGCACCTTTCGCCTCTGCCCCCTAGTCCCTCACCTCGTCTAGAT
GGAAGACAAGATAATTGTGACCGGGACTGAACCAAGGTCTTGGTAGAGCCTGCACAGGCA
CCGTAAGAAGCTGAAGATGCCGTTTGTTCCCACAATCACTGATCTGAAAAGTTCCCAACA
CAGGCAGCTGCCGTGTGTATGGGATCAGGGCCACTACGTAGAATAGTCTCTTACAGATTT
TCCTAAATCCGAGTCACAATGAGAGTATTGCTCCCGAGGGTGGTGTGCAGGGGGGCGGCT
GATGCTAGTCCCGTTGTTTTCTTTGGCTGTCCCATGTGTTTTCACCTCAGCCTGTAGTCT
GCCTCCTCACGTCAAAACCCAGAGTTGTGGGGAGCTAGGGCAGCCAGTGGCACAGGGGGT
TGAGCTGGGACTCTGAAGACTCCTCCCCTTCTCTCCCCTCCCAGCAGCTCTTTGTCACTG
GCTCTGATGGGTGTTTGCCTGGCTGTGTTGCTTCTCTGTCTGTATTTAGCTGCAGTGATC
CTTTAGCTGGTTGGCTCAGAACAATGTGCTTTAGGTGCCCTGTGATACTGGGCATCGAGG
GAGTCCATCCTTCCCCTTTCTGACGTGTTCTCCCGTAGTATCTTCCAGATTCTTACCGTC
AGGGCTCCCAGAGGGGTATTGGCGATCACATGACGCAGGGCCTCAGTCAGTATCCAGCCA
CACATCAGGGAGAAAAGAACTTGTACCTGCTCTGCCCGCTGCTATGGAGGCCTCTGGCTT
GTGGGTCTTGGGACTTCCTGGGGGAGTTGGGAAGGAAAGGGGTTGGGCACAGAGGAGAAT
GTCCTACTTGGGGGGGCAGGAAGCAAACTGGACAGGAGGTTGGCTTAGGGGACGGAAGTT
TAGCTTGGATACCTGAAGCAGCACTGGGTCTGTTCACAAGGAGACTCGAAAAGGGACCCC
GCTTCCAAATTCCCTCTTCCATTCCCAGAGCTAGTACAGGGCTTAGAAGAATGCCCTTGG
TCTGTTGGTCCAGTGTTTTCTGTCATCCATTTAAAGTTCCCACTTTCAAGTGACAATCCT
CTCCTTGGCCCTGCCATTGGGCAGAGCATGTCTGGCATACTAGCCTGACTTTTACGCCCT
AATCTTGAGGAAATATATGCACAGGAGTCAAAGAGATGTCTTTATATCTGACTGTACATA
AATGAAGTTTTTTTTTTTTTCTTTTTGGTGCAATAAAGTTTGTTTTGGGCAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGGTGGGCCACAGAACCTGCGATTCCAAGAGGGAGTGTGCCCAAAGGACTTATGGGG
ATACCTGGAAGGGAGCTTGGGGTGGGGGGCTGTTGTGACCCTTACGCAGTCTGGGTGGTT
GTCTGTCTGTCCGTCTTCAGTCTCGAAGCAGGTCTTCCCAGTGCCCTTTTCCTCCTTGCC
TTTTTACCCCCATTATTTCCCATGGGCCAGCATAATTTTGTTTTTTCTAATTTATAGTCA
CTGTTCTAGACAGACCAAAGAGAAGGAACAGTGGTGGAGTCTAGGCTGCTGATGAGTAAG
CTTTATCGAGCACCTGAGCACCTTTCGCCTCTGCCCCCTAGTCCCTCACCTCGTCTAGAT
GGAAGACAAGATAATTGTGACCGGGACTGAACCAAGGTCTTGGTAGAGCCTGCACAGGCA
CCGTAAGAAGCTGAAGATGCCGTTTGTTCCCACAATCACTGATCTGAAAAGTTCCCAACA
CAGGCAGCTGCCGTGTGTATGGGATCAGGGCCACTACGTAGAATAGTCTCTTACAGATTT
TCCTAAATCCGAGTCACAATGAGAGTATTGCTCCCGAGGGTGGTGTGCAGGGGGGCGGCT
GATGCTAGTCCCGTTGTTTTCTTTGGCTGTCCCATGTGTTTTCACCTCAGCCTGTAGTCT
GCCTCCTCACGTCAAAACCCAGAGTTGTGGGGAGCTAGGGCAGCCAGTGGCACAGGGGGT
TGAGCTGGGACTCTGAAGACTCCTCCCCTTCTCTCCCCTCCCAGCAGCTCTTTGTCACTG
GCTCTGATGGGTGTTTGCCTGGCTGTGTTGCTTCTCTGTCTGTATTTAGCTGCAGTGATC
CTTTAGCTGGTTGGCTCAGAACAATGTGCTTTAGGTGCCCTGTGATACTGGGCATCGAGG
GAGTCCATCCTTCCCCTTTCTGACGTGTTCTCCCGTAGTATCTTCCAGATTCTTACCGTC
AGGGCTCCCAGAGGGGTATTGGCGATCACATGACGCAGGGCCTCAGTCAGTATCCAGCCA
CACATCAGGGAGAAAAGAACTTGTACCTGCTCTGCCCGCTGCTATGGAGGCCTCTGGCTT
GTGGGTCTTGGGACTTCCTGGGGGAGTTGGGAAGGAAAGGGGTTGGGCACAGAGGAGAAT
GTCCTACTTGGGGGGGCAGGAAGCAAACTGGACAGGAGGTTGGCTTAGGGGACGGAAGTT
TAGCTTGGATACCTGAAGCAGCACTGGGTCTGTTCACAAGGAGACTCGAAAAGGGACCCC
GCTTCCAAATTCCCTCTTCCATTCCCAGAGCTAGTACAGGGCTTAGAAGAATGCCCTTGG
TCTGTTGGTCCAGTGTTTTCTGTCATCCATTTAAAGTTCCCACTTTCAAGTGACAATCCT
CTCCTTGGCCCTGCCATTGGGCAGAGCATGTCTGGCATACTAGCCTGACTTTTACGCCCT
AATCTTGAGGAAATATATGCACAGGAGTCAAAGAGATGTCTTTATATCTGACTGTACATA
AATGAAGTTTTTTTTTTTTTCTTTTTGGTGCAATAAAGTTTGTTTTGGGCAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1224-1548, - strand, RNAz p=0.994367

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1224-1548, - strand, RNAz p=0.994367

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-1548, gnl|bosTau2|chr19 (30393608-30392050)
               

               
               5-1548, gnl|Hg17|chr17 (44359826-44361412)
               

               
               5-1548, gnl|Mm7|chr11 (96158973-96157537)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1548, gnl|bosTau2|chr19 (30393608-30392050)
               

               
               5-1548, gnl|Hg17|chr17 (44359826-44361412)
               

               
               5-1548, gnl|Mm7|chr11 (96158973-96157537)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               fty (0.351679)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	5-1548, gnl\|bosTau2\|chr19 (30393608-30392050)
	5-1548, gnl\|Hg17\|chr17 (44359826-44361412)
	5-1548, gnl\|Mm7\|chr11 (96158973-96157537)

	fty (0.351679)
	fce (0.271592)
	ese (0.253004)
	hea (0.204499)
	fcc (0.197785)
	ton (0.1755)
	rec (0.17307)
	fhi (0.169578)
	csp (0.161186)
	cag (0.151194)
	fat (0.147427)
	hyp (0.142837)
	cst (0.140036)
	ssp (0.13552)
	cov (0.132153)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)