Non-Coding RNA Search

Ss1.1-Pig3-SRG8021B14.5

Sequence:


               
               CACAGGTGGCGGCGGCAAAGGCAGCAGAGCCTGTCATAAGATCTTCAGTAACCATCACCA
CCGACTACAACTGAAGACAGCTTCGGCCTCCTCCAATCCCCCCAGCGCCCCGGCCCTGCC
GCTGCACAATTCCTCCGTGACTACCACCTCCCAGTCCCCGGCTCTTTTAGCCGGCACCAA
CTCCATTGCTGTTGTCGCAGATAGAGGCAGTTGCCCCGCACACTACCCGGTGCACGAGTG
CGTCTTCAAGGGGGATGTGAGGAGACTGTCCTCTCTCATCCGCACGCACAATATCGGGCA
GAAAGATAATCACGGTGAGGAGTGCTCGCCCCTCTCCACCTTTCCTTCCCAGAGCCTAAG
TTGGATCTCCCCAGGGTTCTGAAATCGTAAGCTTCTCTCCAACAGAACCTTCTTTCCTCT
CCTTTGCCCATGATCCGAGCCAAATGCCCGTAAATCATGACCGGTTCAGTAATAACATGC
CAGTGGTCTCGGGGATTGGTTCTTGTGGTGCAAAGGAATGTCTCTTCTTGCCTACTTCAA
ACTGTGAGAAACTGTTTATCTTTTTTTTTTTTTTTAATTTACTGGTGTATAGTTGACTTA
CAATGTTGTATTAGTTTCAGGTGTACAGCAAAGTGAATCAGTTATACATATAAATATATC
TGTTATTTTCCCCATATAGGTTATTGCAAACTATTGAGTAGCTTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGGTGGCGGCGGCAAAGGCAGCAGAGCCTGTCATAAGATCTTCAGTAACCATCACCA
CCGACTACAACTGAAGACAGCTTCGGCCTCCTCCAATCCCCCCAGCGCCCCGGCCCTGCC
GCTGCACAATTCCTCCGTGACTACCACCTCCCAGTCCCCGGCTCTTTTAGCCGGCACCAA
CTCCATTGCTGTTGTCGCAGATAGAGGCAGTTGCCCCGCACACTACCCGGTGCACGAGTG
CGTCTTCAAGGGGGATGTGAGGAGACTGTCCTCTCTCATCCGCACGCACAATATCGGGCA
GAAAGATAATCACGGTGAGGAGTGCTCGCCCCTCTCCACCTTTCCTTCCCAGAGCCTAAG
TTGGATCTCCCCAGGGTTCTGAAATCGTAAGCTTCTCTCCAACAGAACCTTCTTTCCTCT
CCTTTGCCCATGATCCGAGCCAAATGCCCGTAAATCATGACCGGTTCAGTAATAACATGC
CAGTGGTCTCGGGGATTGGTTCTTGTGGTGCAAAGGAATGTCTCTTCTTGCCTACTTCAA
ACTGTGAGAAACTGTTTATCTTTTTTTTTTTTTTTAATTTACTGGTGTATAGTTGACTTA
CAATGTTGTATTAGTTTCAGGTGTACAGCAAAGTGAATCAGTTATACATATAAATATATC
TGTTATTTTCCCCATATAGGTTATTGCAAACTATTGAGTAGCTTTTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34189727|gb|AAH16937.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34189727|gb|AAH16937.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               555-708, gnl|bosTau2|chr10 (15601980-15602145)
               


               
               557-669, gnl|bosTau2|chr10 (38370254-38370369)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               555-708, gnl|bosTau2|chr10 (15601980-15602145)
               


               
               557-669, gnl|bosTau2|chr10 (38370254-38370369)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nep (0.183925)
               

               
               nco (0.161734)
               

               
               ctl (0.153069)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               nco (0.161734)
               

               
               ctl (0.153069)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)

	555-708, gnl\|bosTau2\|chr10 (15601980-15602145)

	557-669, gnl\|bosTau2\|chr10 (38370254-38370369)

	nep (0.183925)
	nco (0.161734)
	ctl (0.153069)
	bfe (0.149858)
	kid (0.129735)