Ss1.1-Pig3-SRG8021E06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAACGCCTGGAAGCCAAATACGCCCCGCTCCACCTCGTCCCTCTGATAGAGCGGCTGGG AACCCCTCATCAAATCGCCATCGCTCGGGAGGGCGACCTGCTGACCAAGGAGCGGCTGTG CTGCGGGCTGTCCATGTTCGAGGTCATCCTGACCCGCATCCGGAGCTACCTGCAGGACCC CATCTGGCGGGGCCCGCCGCCCACCAACGGCGTCATGCACGTCGACGAGTGTGTGGAGTT CCACCGGCTCTGGAGCGCCATGCAGTTTGTCTACTGCATCCCCGTGGGGACCAATGAGTT CACAGCCGAGCAGTGTTTTGGAGATGGTCTGAACTGGGCTGGCTGCTCCATCATCGTCCT GCTGGGCCAGCAGCGTCGCTTCGACCTGTTCGACTTCTGTTACCACCTGCTGAAAGTGCA GAGGCAGGACGGGAAGGATGAAATCATTAAGAATGTGCCCCTGAAGAAGATGGCAGACAG GATCAGGAAGTACCAGATCTTGAACAATGAGGTTTTTGCCATCCTGAACAAATACATGAA GTCCGTGGAGACGGACAGTTCCACCGTGGAGCACGTGCGCTGCTTCCAGCCACCCATCCA CCAGTCTCTGGCCACCACCTGCTAGGCAGAAGGTCCTGCAAACCCCCAACCTGGAGGAGG AGAAGCAGCAGGAGAGGGAAAGTCACGGCCAGCCTGTAACAGGGTCCAGATGGACAGCGT GCAGGATGGACTTGGAAGCAAACAAGAACCTCCCCAAACACATCCGCACCCCCGAGGGCT GGGCCTGTGCATGCTCTCCCACGACATCTCCATGGTGGTTTTTCCATAGTGTAAATGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAACGCCTGGAAGCCAAATACGCCCCGCTCCACCTCGTCCCTCTGATAGAGCGGCTGGG AACCCCTCATCAAATCGCCATCGCTCGGGAGGGCGACCTGCTGACCAAGGAGCGGCTGTG CTGCGGGCTGTCCATGTTCGAGGTCATCCTGACCCGCATCCGGAGCTACCTGCAGGACCC CATCTGGCGGGGCCCGCCGCCCACCAACGGCGTCATGCACGTCGACGAGTGTGTGGAGTT CCACCGGCTCTGGAGCGCCATGCAGTTTGTCTACTGCATCCCCGTGGGGACCAATGAGTT CACAGCCGAGCAGTGTTTTGGAGATGGTCTGAACTGGGCTGGCTGCTCCATCATCGTCCT GCTGGGCCAGCAGCGTCGCTTCGACCTGTTCGACTTCTGTTACCACCTGCTGAAAGTGCA GAGGCAGGACGGGAAGGATGAAATCATTAAGAATGTGCCCCTGAAGAAGATGGCAGACAG GATCAGGAAGTACCAGATCTTGAACAATGAGGTTTTTGCCATCCTGAACAAATACATGAA GTCCGTGGAGACGGACAGTTCCACCGTGGAGCACGTGCGCTGCTTCCAGCCACCCATCCA CCAGTCTCTGGCCACCACCTGCTAGGCAGAAGGTCCTGCAAACCCCCAACCTGGAGGAGG AGAAGCAGCAGGAGAGGGAAAGTCACGGCCAGCCTGTAACAGGGTCCAGATGGACAGCGT GCAGGATGGACTTGGAAGCAAACAAGAACCTCCCCAAACACATCCGCACCCCCGAGGGCT GGGCCTGTGCATGCTCTCCCACGACATCTCCATGGTGGTTTTTCCATAGTGTAAATGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 167-310, + strand, RNAz p=0.904179 | |
| 193-310, - strand, RNAz p=0.600788 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 167-310, + strand, RNAz p=0.904179 | |
| 193-310, - strand, RNAz p=0.600788 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 68-310, gnl|bosTau2|chr7 (48028681-48028439) | |
| 68-310, gnl|canFam2|chr4 (55979328-55979073) | |
| 68-310, gnl|danRer3|chr14 (55553168-55553433) | |
| 68-310, gnl|dasNov1|scaffold_18697 (7675-7420) | |
| 68-310, gnl|echTel1|scaffold_282726 (40753-40498) | |
| 68-310, gnl|fr1|chrUn (113914467-113914215) | |
| 68-310, gnl|galGal2|chr13 (10341648-10341393) | |
| 68-310, gnl|hg17|chr5 (156748766-156749021) | |
| 68-310, gnl|Hg17|chr5 (156748772-156749014) | |
| 68-310, gnl|loxAfr1|scaffold_14046 (14234-14489) | |
| 68-310, gnl|mm7|chr11 (46157648-46157393) | |
| 68-310, gnl|Mm7|chr11 (46157640-46157398) | |
| 68-310, gnl|monDom2|scaffold_11 (7933243-7933498) | |
| 68-310, gnl|oryCun1|scaffold_195718 (13198-12943) | |
| 68-310, gnl|panTro1|chr4 (163749597-163749852) | |
| 68-310, gnl|rheMac2|chr6 (153767604-153767859) | |
| 68-310, gnl|rn3|chr10 (31328883-31328628) | |
| 68-310, gnl|tetNig1|chr1 (3362530-3362781) | |
| 68-310, gnl|xenTro1|scaffold_669 (526011-525756) | |
| 457-840, gnl|bosTau2|chr7 (48024145-48023764) | |
| 457-840, gnl|Hg17|chr5 (156752418-156752796) | |
| 457-840, gnl|Mm7|chr11 (46153221-46152840) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-310, gnl|bosTau2|chr7 (48028681-48028439) | |
| 68-310, gnl|canFam2|chr4 (55979328-55979073) | |
| 68-310, gnl|danRer3|chr14 (55553168-55553433) | |
| 68-310, gnl|dasNov1|scaffold_18697 (7675-7420) | |
| 68-310, gnl|echTel1|scaffold_282726 (40753-40498) | |
| 68-310, gnl|fr1|chrUn (113914467-113914215) | |
| 68-310, gnl|galGal2|chr13 (10341648-10341393) | |
| 68-310, gnl|hg17|chr5 (156748766-156749021) | |
| 68-310, gnl|Hg17|chr5 (156748772-156749014) | |
| 68-310, gnl|loxAfr1|scaffold_14046 (14234-14489) | |
| 68-310, gnl|mm7|chr11 (46157648-46157393) | |
| 68-310, gnl|Mm7|chr11 (46157640-46157398) | |
| 68-310, gnl|monDom2|scaffold_11 (7933243-7933498) | |
| 68-310, gnl|oryCun1|scaffold_195718 (13198-12943) | |
| 68-310, gnl|panTro1|chr4 (163749597-163749852) | |
| 68-310, gnl|rheMac2|chr6 (153767604-153767859) | |
| 68-310, gnl|rn3|chr10 (31328883-31328628) | |
| 68-310, gnl|tetNig1|chr1 (3362530-3362781) | |
| 68-310, gnl|xenTro1|scaffold_669 (526011-525756) | |
| 457-840, gnl|bosTau2|chr7 (48024145-48023764) | |
| 457-840, gnl|Hg17|chr5 (156752418-156752796) | |
| 457-840, gnl|Mm7|chr11 (46153221-46152840) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |