Non-Coding RNA Search

Ss1.1-Pig3-SRG8021F06.3

Sequence:


               
               TCCCCCTCCCCGGAAAAAAAAAAAAAAAACAGCAAAACACAAGACCGACCCCCAAGCTAG
AGGAAAGTGAAAAGCTGCCCCCACCCCCCTTATTTGGTCCTCTCGTAGTTGTGAAACACT
TGCAGAGCAAACAAAGCAGAGGCGAGAACTGAGAAGTATCAGAGACAAACGGGACTTCCA
GCCCAGACATCCCCAGAATTTCGGTCTTTAGGGTGGGCAGGGCGGGAGGAGGGAGGTGGA
GTTGGGGTGGAGGACGGATGTCTTTTTTCACGGAAAAGTGGCAACTTTGGTGGCAGCTTA
GATCGCGAGGAAGCAGAGTTTCCCTTTAAGGTTAAATATAAGTTGGGATGTAGTCGTTAT
TAAGCGTGGAGAGTTACATGGCAAAATAGTAATCCTACTACTAATTGTGAAATTGGCTAG
AGGGAGAGAGGAAGAGTTCGGGTTTGGGTGGGTTGTGGGACGGAGTATTCATTCAGACAA
ATCAGAAAGGGCACTTGAAAATAAATTTTGATTCTGAGCCAGGAGAAAAACTTGAAATGT
AGATTTATTTAAGTGAAAAAAAAAAAAAAAAGAAAAAAACCAGAAAGAGACACGTTGCTA
TGAAAGACTTGTATTTTTTATTGTCTCTGAACTTTCATTCTGTGAAAATGCTCAAAAGTT
TGGGCAAGAGTGATATAAAAAACTGACTGTGGCTGAAAGAATTGCATTTAAAAATATTTA
TGTGCACCTTGTTACTTTCCACTCTGCAATGATGTATTAACAATACATGGTATTTATTTG
TTATTCTTCAATGACCCTTCCACATCAACAGTATTTATCATGTGTTAAGGTCATAGGTCT
TATGTGCAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCCTCCCCGGAAAAAAAAAAAAAAAACAGCAAAACACAAGACCGACCCCCAAGCTAG
AGGAAAGTGAAAAGCTGCCCCCACCCCCCTTATTTGGTCCTCTCGTAGTTGTGAAACACT
TGCAGAGCAAACAAAGCAGAGGCGAGAACTGAGAAGTATCAGAGACAAACGGGACTTCCA
GCCCAGACATCCCCAGAATTTCGGTCTTTAGGGTGGGCAGGGCGGGAGGAGGGAGGTGGA
GTTGGGGTGGAGGACGGATGTCTTTTTTCACGGAAAAGTGGCAACTTTGGTGGCAGCTTA
GATCGCGAGGAAGCAGAGTTTCCCTTTAAGGTTAAATATAAGTTGGGATGTAGTCGTTAT
TAAGCGTGGAGAGTTACATGGCAAAATAGTAATCCTACTACTAATTGTGAAATTGGCTAG
AGGGAGAGAGGAAGAGTTCGGGTTTGGGTGGGTTGTGGGACGGAGTATTCATTCAGACAA
ATCAGAAAGGGCACTTGAAAATAAATTTTGATTCTGAGCCAGGAGAAAAACTTGAAATGT
AGATTTATTTAAGTGAAAAAAAAAAAAAAAAGAAAAAAACCAGAAAGAGACACGTTGCTA
TGAAAGACTTGTATTTTTTATTGTCTCTGAACTTTCATTCTGTGAAAATGCTCAAAAGTT
TGGGCAAGAGTGATATAAAAAACTGACTGTGGCTGAAAGAATTGCATTTAAAAATATTTA
TGTGCACCTTGTTACTTTCCACTCTGCAATGATGTATTAACAATACATGGTATTTATTTG
TTATTCTTCAATGACCCTTCCACATCAACAGTATTTATCATGTGTTAAGGTCATAGGTCT
TATGTGCAGACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               34-850, gnl|bosTau2|chr14 (18677533-18678343)
               

               
               34-850, gnl|Hg17|chr8 (65657060-65657902)
               

               
               34-850, gnl|Mm7|chr3 (17781674-17782479)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-850, gnl|bosTau2|chr14 (18677533-18678343)
               

               
               34-850, gnl|Hg17|chr8 (65657060-65657902)
               

               
               34-850, gnl|Mm7|chr3 (17781674-17782479)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               ebs (0.118301)

	34-850, gnl\|bosTau2\|chr14 (18677533-18678343)
	34-850, gnl\|Hg17\|chr8 (65657060-65657902)
	34-850, gnl\|Mm7\|chr3 (17781674-17782479)