Non-Coding RNA Search

Ss1.1-Pig3-SRG8021F12.3

Sequence:


               
               CCGCAGCCATGTCCCGGCCCCTGACGGACCAGGAGAAGAGAAAGCAGATCAGCGTGCGCG
GCCTGGCCGGCGTGGAGAATGTGGCGGAGCTGAAGAAGAACTTCAACCGGCACCTGCACT
TCACCCTCGTGAAGGACCGCAACGTGGCCAACGCCCGCGACTACTACTTCGCGCTCGCCT
ACACCGTGCGCGACCACCTCGTGGGCCGCTGGATCCGCACGCAGCAGCACTACTATGAGA
AGGACCCCAAGAGGATCTATTACCTGTCTCTGGAATTCTACATGGGCCGGACGCTACAAA
ACACCATGGTGAACCTGGCCTTGGAAAATGCCTGTGATGAGGCCACCTACCAGCTGGGCT
TGGACATGGAAGAGCTGGAGGAAATGGAGGAGGATGCCGGGCTCGGCAATGGGGGCCTGG
GCCGGCTGGCAGCCTGCTTTCTGGACTCCATGGCAACACTGGGCCTGGCTGCCTATGGCT
ACGGGATCCGCTATGAGTTTGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCAGCCATGTCCCGGCCCCTGACGGACCAGGAGAAGAGAAAGCAGATCAGCGTGCGCG
GCCTGGCCGGCGTGGAGAATGTGGCGGAGCTGAAGAAGAACTTCAACCGGCACCTGCACT
TCACCCTCGTGAAGGACCGCAACGTGGCCAACGCCCGCGACTACTACTTCGCGCTCGCCT
ACACCGTGCGCGACCACCTCGTGGGCCGCTGGATCCGCACGCAGCAGCACTACTATGAGA
AGGACCCCAAGAGGATCTATTACCTGTCTCTGGAATTCTACATGGGCCGGACGCTACAAA
ACACCATGGTGAACCTGGCCTTGGAAAATGCCTGTGATGAGGCCACCTACCAGCTGGGCT
TGGACATGGAAGAGCTGGAGGAAATGGAGGAGGATGCCGGGCTCGGCAATGGGGGCCTGG
GCCGGCTGGCAGCCTGCTTTCTGGACTCCATGGCAACACTGGGCCTGGCTGCCTATGGCT
ACGGGATCCGCTATGAGTTTGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32766549|gb|AAH55181.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32766549|gb|AAH55181.1|

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-251, gnl|bosTau2|chr10 (29357546-29357296)
               

               
               1-251, gnl|canFam2|chr8 (30313405-30313655)
               

               
               1-251, gnl|danRer3|chr13 (39533403-39533661)
               

               
               1-251, gnl|dasNov1|scaffold_11681 (2040-2294)
               

               
               1-251, gnl|echTel1|scaffold_157787 (3545-3795)
               

               
               1-251, gnl|fr1|chrUn (2684792-2684524)
               

               
               1-251, gnl|galGal2|chr5 (54654082-54654335)
               

               
               1-251, gnl|hg17|chr14 (50480626-50480890)
               

               
               1-251, gnl|Hg17|chr14 (50480882-50480629)
               

               
               1-251, gnl|loxAfr1|scaffold_84598 (866-612)
               

               
               1-251, gnl|mm7|chr12 (68168331-68168584)
               

               
               1-251, gnl|Mm7|chr12 (68168584-68168333)
               

               
               1-251, gnl|monDom2|scaffold_73 (7273427-7273681)
               

               
               1-251, gnl|oryCun1|scaffold_206084 (3652-3414)
               

               
               1-251, gnl|panTro1|chr15 (49899975-49900239)
               

               
               1-251, gnl|rheMac2|chr7 (113996256-113996509)
               

               
               1-251, gnl|rn3|chr6 (92344544-92344797)
               

               
               1-251, gnl|tetNig1|chr10 (11253692-11253424)
               

               
               1-251, gnl|xenTro1|scaffold_341 (962689-962426)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-251, gnl|bosTau2|chr10 (29357546-29357296)
               

               
               1-251, gnl|canFam2|chr8 (30313405-30313655)
               

               
               1-251, gnl|danRer3|chr13 (39533403-39533661)
               

               
               1-251, gnl|dasNov1|scaffold_11681 (2040-2294)
               

               
               1-251, gnl|echTel1|scaffold_157787 (3545-3795)
               

               
               1-251, gnl|fr1|chrUn (2684792-2684524)
               

               
               1-251, gnl|galGal2|chr5 (54654082-54654335)
               

               
               1-251, gnl|hg17|chr14 (50480626-50480890)
               

               
               1-251, gnl|Hg17|chr14 (50480882-50480629)
               

               
               1-251, gnl|loxAfr1|scaffold_84598 (866-612)
               

               
               1-251, gnl|mm7|chr12 (68168331-68168584)
               

               
               1-251, gnl|Mm7|chr12 (68168584-68168333)
               

               
               1-251, gnl|monDom2|scaffold_73 (7273427-7273681)
               

               
               1-251, gnl|oryCun1|scaffold_206084 (3652-3414)
               

               
               1-251, gnl|panTro1|chr15 (49899975-49900239)
               

               
               1-251, gnl|rheMac2|chr7 (113996256-113996509)
               

               
               1-251, gnl|rn3|chr6 (92344544-92344797)
               

               
               1-251, gnl|tetNig1|chr10 (11253692-11253424)
               

               
               1-251, gnl|xenTro1|scaffold_341 (962689-962426)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-251, gnl\|bosTau2\|chr10 (29357546-29357296)
	1-251, gnl\|canFam2\|chr8 (30313405-30313655)
	1-251, gnl\|danRer3\|chr13 (39533403-39533661)
	1-251, gnl\|dasNov1\|scaffold_11681 (2040-2294)
	1-251, gnl\|echTel1\|scaffold_157787 (3545-3795)
	1-251, gnl\|fr1\|chrUn (2684792-2684524)
	1-251, gnl\|galGal2\|chr5 (54654082-54654335)
	1-251, gnl\|hg17\|chr14 (50480626-50480890)
	1-251, gnl\|Hg17\|chr14 (50480882-50480629)
	1-251, gnl\|loxAfr1\|scaffold_84598 (866-612)
	1-251, gnl\|mm7\|chr12 (68168331-68168584)
	1-251, gnl\|Mm7\|chr12 (68168584-68168333)
	1-251, gnl\|monDom2\|scaffold_73 (7273427-7273681)
	1-251, gnl\|oryCun1\|scaffold_206084 (3652-3414)
	1-251, gnl\|panTro1\|chr15 (49899975-49900239)
	1-251, gnl\|rheMac2\|chr7 (113996256-113996509)
	1-251, gnl\|rn3\|chr6 (92344544-92344797)
	1-251, gnl\|tetNig1\|chr10 (11253692-11253424)
	1-251, gnl\|xenTro1\|scaffold_341 (962689-962426)