Non-Coding RNA Search

Ss1.1-Pig3-SRG8021H13.5

Sequence:


               
               TTTCTTGGTGAGAAATAATAATAATGATGAATAATAATAAAACTGGAAAATGTAAGCAAG
GTGGACGCATTGCTTCTCGGTACTCAGAAAGGTTGTCTGAATTCGTGTGGTAAGCGCTGG
CCTGAAGATGTGTACAATTTAAAGCCATATTTTGTCTGGTGAGCCCCTTAACTGTTTGTG
AAGGACCGGTCAGCCGGTGAGGTATCCGGCTCAGACCCTGACAACAGACGCCACCCATAG
TCAGCCATGCGTAGTGGTTAGAACTTATCTTGAAAGTCCAAAGAGCCTTTAAAATGTGTA
TCATTTGTGTTTTGTTGCCTCTATTTATATTGATTAGATGAAAAGACGTTCTGACCCTCG
GACCCTCTTTCTTCTACACAAAACTTTTACAAGTAAATATGTTCCCCTAAATACAGAATA
TGGCTTTAAGACGAAAATAGAGAATTCAACTAAGATTTTGGTTTTGGGGGAAAAATACAG
CTTCTGGATGACTGGATTGCATAACATGCCCTGGCCTCACATTGTACAAGGATGCAGCTT
AACAAAGTCATCTCTAAGTCTAACCTTTCACCTTCTTATCAAACTTTTGGAATAGACACA
CACTGTACAGTTCAATTGTTAGAGAACCTAACTACTGTAGAGATTGTTATAATTTTTTTT
TTTTGCAAAAATTCAAGCTGTAAAAACTTTTCAACTTTCACAATATTTAATTAAAGTTAC
TTCCTGTCTGTGAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTTGGTGAGAAATAATAATAATGATGAATAATAATAAAACTGGAAAATGTAAGCAAG
GTGGACGCATTGCTTCTCGGTACTCAGAAAGGTTGTCTGAATTCGTGTGGTAAGCGCTGG
CCTGAAGATGTGTACAATTTAAAGCCATATTTTGTCTGGTGAGCCCCTTAACTGTTTGTG
AAGGACCGGTCAGCCGGTGAGGTATCCGGCTCAGACCCTGACAACAGACGCCACCCATAG
TCAGCCATGCGTAGTGGTTAGAACTTATCTTGAAAGTCCAAAGAGCCTTTAAAATGTGTA
TCATTTGTGTTTTGTTGCCTCTATTTATATTGATTAGATGAAAAGACGTTCTGACCCTCG
GACCCTCTTTCTTCTACACAAAACTTTTACAAGTAAATATGTTCCCCTAAATACAGAATA
TGGCTTTAAGACGAAAATAGAGAATTCAACTAAGATTTTGGTTTTGGGGGAAAAATACAG
CTTCTGGATGACTGGATTGCATAACATGCCCTGGCCTCACATTGTACAAGGATGCAGCTT
AACAAAGTCATCTCTAAGTCTAACCTTTCACCTTCTTATCAAACTTTTGGAATAGACACA
CACTGTACAGTTCAATTGTTAGAGAACCTAACTACTGTAGAGATTGTTATAATTTTTTTT
TTTTGCAAAAATTCAAGCTGTAAAAACTTTTCAACTTTCACAATATTTAATTAAAGTTAC
TTCCTGTCTGTGAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-733, gnl|bosTau2|chr7 (47343060-47342320)
               

               
               1-733, gnl|Hg17|chr5 (158056263-158055506)
               

               
               1-733, gnl|Mm7|chr11 (44964018-44964844)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-733, gnl|bosTau2|chr7 (47343060-47342320)
               

               
               1-733, gnl|Hg17|chr5 (158056263-158055506)
               

               
               1-733, gnl|Mm7|chr11 (44964018-44964844)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               hea (0.204499)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	1-733, gnl\|bosTau2\|chr7 (47343060-47342320)
	1-733, gnl\|Hg17\|chr5 (158056263-158055506)
	1-733, gnl\|Mm7\|chr11 (44964018-44964844)

	hea (0.204499)
	aor (0.195274)
	fbs (0.175346)
	nco (0.161734)
	ski (0.146735)
	liv (0.146284)
	lnt (0.142308)
	nca (0.136874)
	ret (0.128733)
	bla (0.124347)
	eru (0.120048)
	jca (0.11396)