Non-Coding RNA Search

Ss1.1-Pig3-SRG8021I19.3

Sequence:


               
               GCGGCTCGAGCACCTATGCAGATTTGGGAGTTGCGCACCATGGGGACTCCGAATGACCAG
GCGGTGTTGCAGGCCATCTTCAACCCGGACTCCCCATTTGGAGACATCATTGGATTGGAC
CCAGGACAGGAAGCACAGAAGGAAGTAGATGAAGATGGAGTTTTCCCTCGAGCACAGCTG
GAGCAGTCCAAGGCCCTGGAGCTGCAGGGGGTGATAGCAGCAGAAGCTGGTGACCTCAGT
ACAGCCCTGGAGAGGTTTGGTCAAGCCATCAACCTACTGCCTGAGAGGGCTTCAGCCTAC
AACAACCGAGCCCAGGCCCGGCGACTCCAGGGAGATGTGGCAGGAGCCCTGGAAGACCTG
GAGCGCGCGCTGGCGCTGAGCGGCGGCCGGGGCCGCGCCGCCCGCCAGGGGTTCGTGCAG
CGCGGGCTCGTGGCGCGGCTGCAGGGCCGGGACGACGACGCCCGCGAGGACTTTGAGCGA
GCGGCGCGGCTGGGCAGCGAGTTCGCCCGGCGCCAGCTGGTGCTGCTCAACCCGTACGCG
GCTCTGTGCAACCGCATGCTAGCAGACATGATGGGGCAGCTGCGCGGGGAGCTCAACGGG
CGCTGAGCCGCTGGCGGGCGGGGGAGGGTGGGAGGGGCACCTGCAACCAATAAAGCTGCC
GGCTTCCCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCACCTATGCAGATTTGGGAGTTGCGCACCATGGGGACTCCGAATGACCAG
GCGGTGTTGCAGGCCATCTTCAACCCGGACTCCCCATTTGGAGACATCATTGGATTGGAC
CCAGGACAGGAAGCACAGAAGGAAGTAGATGAAGATGGAGTTTTCCCTCGAGCACAGCTG
GAGCAGTCCAAGGCCCTGGAGCTGCAGGGGGTGATAGCAGCAGAAGCTGGTGACCTCAGT
ACAGCCCTGGAGAGGTTTGGTCAAGCCATCAACCTACTGCCTGAGAGGGCTTCAGCCTAC
AACAACCGAGCCCAGGCCCGGCGACTCCAGGGAGATGTGGCAGGAGCCCTGGAAGACCTG
GAGCGCGCGCTGGCGCTGAGCGGCGGCCGGGGCCGCGCCGCCCGCCAGGGGTTCGTGCAG
CGCGGGCTCGTGGCGCGGCTGCAGGGCCGGGACGACGACGCCCGCGAGGACTTTGAGCGA
GCGGCGCGGCTGGGCAGCGAGTTCGCCCGGCGCCAGCTGGTGCTGCTCAACCCGTACGCG
GCTCTGTGCAACCGCATGCTAGCAGACATGATGGGGCAGCTGCGCGGGGAGCTCAACGGG
CGCTGAGCCGCTGGCGGGCGGGGGAGGGTGGGAGGGGCACCTGCAACCAATAAAGCTGCC
GGCTTCCCCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51468631|ref|XP_084672.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51468631|ref|XP_084672.3|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               21-164, gnl|bosTau2|chr15 (15017769-15017627)
               

               
               21-164, gnl|Hg17|chr11 (117903401-117903546)
               

               
               21-164, gnl|Mm7|chr9 (44737177-44737047)
               


               
               340-671, gnl|bosTau2|chr15 (15013724-15013398)
               

               
               340-671, gnl|Hg17|chr11 (117906575-117906917)
               

               
               340-671, gnl|Mm7|chr9 (44734082-44733743)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-164, gnl|bosTau2|chr15 (15017769-15017627)
               

               
               21-164, gnl|Hg17|chr11 (117903401-117903546)
               

               
               21-164, gnl|Mm7|chr9 (44737177-44737047)
               


               
               340-671, gnl|bosTau2|chr15 (15013724-15013398)
               

               
               340-671, gnl|Hg17|chr11 (117906575-117906917)
               

               
               340-671, gnl|Mm7|chr9 (44734082-44733743)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (0.305623)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               jca (0.11396)

	21-164, gnl\|bosTau2\|chr15 (15017769-15017627)
	21-164, gnl\|Hg17\|chr11 (117903401-117903546)
	21-164, gnl\|Mm7\|chr9 (44737177-44737047)

	340-671, gnl\|bosTau2\|chr15 (15013724-15013398)
	340-671, gnl\|Hg17\|chr11 (117906575-117906917)
	340-671, gnl\|Mm7\|chr9 (44734082-44733743)