Non-Coding RNA Search

Ss1.1-Pig3-SRG8021J14.5

Sequence:


               
               GCCCCCCAAATCTCCCGTCCCTGCCCCCAGGTCATACAGCACTGGCATCAATTAAGTCAC
AGTTCCCAGGGACTTGAACAGAGGCTGCCAAGGTCCCAGTAATTGCCACTCTGGCCTTCC
AGAGACTAATTCCAAAGAAGGAAGGAACAGATCCAGCAGAACCTGCTTCCTGCTGACTCT
GCACATAGGAGACCAGACATCCGAGCTTCTAGCCCTACCCATGGAAACTCAGGCGGATCG
TGTATCTCAGGAACCTCAGGCCCTCTTGATGCTGTGGGGGCACAGTGGAGGTTTTTCTTT
CTGGGAGAAACATTGTTTACTGATCCAGGCACTGGGGACTTGTTCTCAACAATATGCCTT
TGCGTTCCAGCTTCGGCTTACCCAGCTGGGAGGAGGGAGCACTGCTTTTTTCTCTGAAGT
CAAAGCCTCTTTCCTTTCCTTTCTGTGGAGAGGTTGGACGGAGAGCTGATTTGTTGGGGG
GTTTCTGCTTATAAACAGCCCTGAAGATGGTACACTTGGTTGATAGGAAGGAAAAGACGG
CTGGCTCTGAGAAAGCGCTGAAGGCCCCTAGCCAAGAGAGTGATGGAGGCAAGAAAGTGT
CACTGTGATTGTCGGTGGCCTGGCTCTTGCTTGATTCATTGCTTTTCTGAATTCTCTGAG
CTCTGAGTGACTCTTGGGGCCCCTCCCCTTCTTATGTCTTATGTGAATGCAAGCGTCTTT
AGTGGTGGAGCAAATGGCTTTTGCATTGCTGATTTTTTTTTACTTCTTCCAGTAGTGCCT
TGCAGTGTAATTGGCATTCAATAAATGTTACATGAGCAGATGAATAAAGAGAAGGGGGTA
GACAAAATCCAGGGGTTGCCTTTGTGTTCTTGCCAAAGTGGAAGGATGCTCTGGTGGCTG
CTGCACCTGTTCTCTATCTGCTGATTCTTGCCACAGCATTAAGCTGTGAAACACAACCTG
GTGCTTGAGATCGCAACCTTATTCTAGGTACTAACGTTATGTCTTACTCACCAGGGCCAC
AGAAAATAGACCCCCTTTGATTGTCATAGCAACTGGGGAGTGGGGAACCCTTAATAGGGA
TAAAAACAGAGAAATAAACAATCTCATGTTTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCCCAAATCTCCCGTCCCTGCCCCCAGGTCATACAGCACTGGCATCAATTAAGTCAC
AGTTCCCAGGGACTTGAACAGAGGCTGCCAAGGTCCCAGTAATTGCCACTCTGGCCTTCC
AGAGACTAATTCCAAAGAAGGAAGGAACAGATCCAGCAGAACCTGCTTCCTGCTGACTCT
GCACATAGGAGACCAGACATCCGAGCTTCTAGCCCTACCCATGGAAACTCAGGCGGATCG
TGTATCTCAGGAACCTCAGGCCCTCTTGATGCTGTGGGGGCACAGTGGAGGTTTTTCTTT
CTGGGAGAAACATTGTTTACTGATCCAGGCACTGGGGACTTGTTCTCAACAATATGCCTT
TGCGTTCCAGCTTCGGCTTACCCAGCTGGGAGGAGGGAGCACTGCTTTTTTCTCTGAAGT
CAAAGCCTCTTTCCTTTCCTTTCTGTGGAGAGGTTGGACGGAGAGCTGATTTGTTGGGGG
GTTTCTGCTTATAAACAGCCCTGAAGATGGTACACTTGGTTGATAGGAAGGAAAAGACGG
CTGGCTCTGAGAAAGCGCTGAAGGCCCCTAGCCAAGAGAGTGATGGAGGCAAGAAAGTGT
CACTGTGATTGTCGGTGGCCTGGCTCTTGCTTGATTCATTGCTTTTCTGAATTCTCTGAG
CTCTGAGTGACTCTTGGGGCCCCTCCCCTTCTTATGTCTTATGTGAATGCAAGCGTCTTT
AGTGGTGGAGCAAATGGCTTTTGCATTGCTGATTTTTTTTTACTTCTTCCAGTAGTGCCT
TGCAGTGTAATTGGCATTCAATAAATGTTACATGAGCAGATGAATAAAGAGAAGGGGGTA
GACAAAATCCAGGGGTTGCCTTTGTGTTCTTGCCAAAGTGGAAGGATGCTCTGGTGGCTG
CTGCACCTGTTCTCTATCTGCTGATTCTTGCCACAGCATTAAGCTGTGAAACACAACCTG
GTGCTTGAGATCGCAACCTTATTCTAGGTACTAACGTTATGTCTTACTCACCAGGGCCAC
AGAAAATAGACCCCCTTTGATTGTCATAGCAACTGGGGAGTGGGGAACCCTTAATAGGGA
TAAAAACAGAGAAATAAACAATCTCATGTTTTAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               380-499, + strand, RNAz p=0.9932

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               380-499, + strand, RNAz p=0.9932

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               31-647, gnl|bosTau2|chr25 (33163212-33162589)
               

               
               31-647, gnl|Hg17|chr7 (99321939-99321323)
               


               
               755-1116, gnl|bosTau2|chr25 (33162457-33162109)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-647, gnl|bosTau2|chr25 (33163212-33162589)
               

               
               31-647, gnl|Hg17|chr7 (99321939-99321323)
               


               
               755-1116, gnl|bosTau2|chr25 (33162457-33162109)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	31-647, gnl\|bosTau2\|chr25 (33163212-33162589)
	31-647, gnl\|Hg17\|chr7 (99321939-99321323)

	755-1116, gnl\|bosTau2\|chr25 (33162457-33162109)