Non-Coding RNA Search

Ss1.1-Pig3-SRG8021K03.3

Sequence:


               
               GAGAAGCTTCCTATTACCTGGGCTTAGCACACTTGGCTGCTGGGGAGTATGAAACAGCAT
TAGCAGTCCTTAACACTTACGGTAAAATCTCTGCAGACCTGGATGATGATCTGAGCCTGG
GGAGAGCCTATGAAGCCACGGCCAAAGTCCTGCAGAGCCAAGGACAGATGACAGAAGCAA
TTCAATACCTGAAAAAAGTTGTGAACATTGCAAGAAACAATTTTCAAAGCCTAGATTTTG
TGAGAGCAAGTACAATGCTTGGCGACATCTTCAATGAAAAAGGCTCCTACCACAAAGCTT
CTGAATACTTTCAGCAAGCTTTTGACACAACAGCAGAGCTAACAAACGTACCTCTGATGG
ATGAAACAAAAGTTCATTATGGAATAGCGAAAGCTCATCAGATGATGCTGACGGTTAATA
CTTATATAGAATCTGCAGATCTCACCAGTCTGGACTACCTGCTGTCATGGAAGGAGAGTA
GAAGTGACATTGCACCTGATCCAGTTGTTGGAGGGTCAAGAAGATCCACAATGGAAGGTT
TATATCAAACCTCAGAGTATTTGGAAGAAGAACACAGTGGATAACCGCCCAAAAAAACAG
CTTTGACTCAACAACAAAGCAAGAAGAAATACATCATATCACTTTAGCCTTTGAGACCTG
TAATAGGAATGTGTTACAAATAATACAGATAGAGTTATAATAAAACTATGACTGTTTTTA
CTGGAGTTTGTATTATAAGTAACTACTACAAATTTAGTCTAAAATATCTAAATCCATGCA
AATAAAATATATCCCAAATGCTTAGAAAAAGCAATAATTATCCATACACTAAACTATAAA
ATTTTCCTCTTATCCACTATTCCACCAAAAAATAGTGCTATTATAGGATCAAAATGTGGT
TGTGTCTAATGAGAAAATCATTTTAAGCTTAAGGACGTCTATGCTGAATAAAGGTAGGAG
AAGATTTACTACAATTCCAGGGATTCTTTTTAACATGGATAAAAGGATTGTAAGCAATAA
AGACTATCATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAGCTTCCTATTACCTGGGCTTAGCACACTTGGCTGCTGGGGAGTATGAAACAGCAT
TAGCAGTCCTTAACACTTACGGTAAAATCTCTGCAGACCTGGATGATGATCTGAGCCTGG
GGAGAGCCTATGAAGCCACGGCCAAAGTCCTGCAGAGCCAAGGACAGATGACAGAAGCAA
TTCAATACCTGAAAAAAGTTGTGAACATTGCAAGAAACAATTTTCAAAGCCTAGATTTTG
TGAGAGCAAGTACAATGCTTGGCGACATCTTCAATGAAAAAGGCTCCTACCACAAAGCTT
CTGAATACTTTCAGCAAGCTTTTGACACAACAGCAGAGCTAACAAACGTACCTCTGATGG
ATGAAACAAAAGTTCATTATGGAATAGCGAAAGCTCATCAGATGATGCTGACGGTTAATA
CTTATATAGAATCTGCAGATCTCACCAGTCTGGACTACCTGCTGTCATGGAAGGAGAGTA
GAAGTGACATTGCACCTGATCCAGTTGTTGGAGGGTCAAGAAGATCCACAATGGAAGGTT
TATATCAAACCTCAGAGTATTTGGAAGAAGAACACAGTGGATAACCGCCCAAAAAAACAG
CTTTGACTCAACAACAAAGCAAGAAGAAATACATCATATCACTTTAGCCTTTGAGACCTG
TAATAGGAATGTGTTACAAATAATACAGATAGAGTTATAATAAAACTATGACTGTTTTTA
CTGGAGTTTGTATTATAAGTAACTACTACAAATTTAGTCTAAAATATCTAAATCCATGCA
AATAAAATATATCCCAAATGCTTAGAAAAAGCAATAATTATCCATACACTAAACTATAAA
ATTTTCCTCTTATCCACTATTCCACCAAAAAATAGTGCTATTATAGGATCAAAATGTGGT
TGTGTCTAATGAGAAAATCATTTTAAGCTTAAGGACGTCTATGCTGAATAAAGGTAGGAG
AAGATTTACTACAATTCCAGGGATTCTTTTTAACATGGATAAAAGGATTGTAAGCAATAA
AGACTATCATAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|34851686|ref|XP_344758.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34851686|ref|XP_344758.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               594-1031, gnl|bosTau2|chr17 (6234028-6234480)
               

               
               594-1031, gnl|Hg17|chr4 (147985916-147985480)
               

               
               594-1031, gnl|Mm7|chr8 (76933915-76934298)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               594-1031, gnl|bosTau2|chr17 (6234028-6234480)
               

               
               594-1031, gnl|Hg17|chr4 (147985916-147985480)
               

               
               594-1031, gnl|Mm7|chr8 (76933915-76934298)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cte (0.29274)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)

	594-1031, gnl\|bosTau2\|chr17 (6234028-6234480)
	594-1031, gnl\|Hg17\|chr4 (147985916-147985480)
	594-1031, gnl\|Mm7\|chr8 (76933915-76934298)