Non-Coding RNA Search

Ss1.1-Pig3-SRG8021M21.3

Sequence:


               
               GATGTGGATGGTTTAGAAATTTTCAGGTTTGGCTCTATGTAATGGATGAAAGCAATTTAG
TGTTTGGGGAGTCTTTTTTAATTTTTTAATTTTTGTCCTAATTGTGCCTCTGTGGCAAAA
TGATACAGAAAGAACTAGAGTAAAGTGGTAGCTTTTAATATTTGTCTTCTGGTGGTGATA
GGAATTCATACATTAATTGAACTAACACATCATATTGACCTACTATTTCTATCATATTGA
CTTGATGTTTCTGCACTTCCTTGACCAAACCTAACTAAAAGTCCACGTTTGTTAAAATGT
AGTCACACATGATATAATCCAACAAAAAGTGTTCGAAATATTTTAAATTTTTGTGCATTT
TATAATCACTAAATTAATCTCTCTCTCTTCTCTTTAAAGCACTTAGCAGTGTCTGCAAAA
ACGAATCTTTTCCTACAACCTGTTAACTGACTGGACTGATGGTAACAAAGTAATTGTGGG
AGCCATGTCGGTCAAATATTTGGCATCTGCTGAAAAAATGAATGCCATTTTCAAGTTCCC
AAATTACTTCTATACTGATTTCACTTTCCAGAAATGGAGATATGAAAAGATTCTCTGGAA
TCCTTGAAAGACTTAATAGAAATACATGAGACTAAGTTAATTTTGGAACAAAATTATACT
TTTTTGTCTTTCACGGGAGTGATAACTCAGTTCTTTGCATACCTTTTAAAAATTGTAACC
TTTGAAGAGATGGTAGTATTTCATCAAGGAATATTAGATTCTTTACGTAATCAAGAGCAC
ATTCTATGGATTTAGATTTAGTGGAGTAGAATTACATAAACAGGCCATCAGTGATCACGA
GGCATATCATGAGTTTGTATTTATTTCCTGGAACATGAGAGCTAATCTTAAGTACAGACA
CCTTGCTGTGAGGAATATAAAAGTTAATGTAAAGAGTAGTCTTTTTAAGTAGATGCACTG
ATTTGTCTGTATATCTTTGAAAACATTGATTATGAGAATGTGTGGGTAGTTAATTGCAAT
TCAGAGTAATGCCAAGATGTTTGGATTCTGAGGTTTTTGGCTTGAGCTTTCTGTGAGGAC
TTCTAAAAAATATTTTGAGGCTTCTAATGAATGGTATACTAGTTTCTGTGGTTTTATATT
AAAATTTCTCTAGTATGTAAGGGCTTTAGTATTCTGGATGATATGGGCTTTTTTCATGGA
ATATGGTTGTTTTACTTAATTGAAAACATTTTTGCAGCTCATTACAAGTGTGAAAAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGTGGATGGTTTAGAAATTTTCAGGTTTGGCTCTATGTAATGGATGAAAGCAATTTAG
TGTTTGGGGAGTCTTTTTTAATTTTTTAATTTTTGTCCTAATTGTGCCTCTGTGGCAAAA
TGATACAGAAAGAACTAGAGTAAAGTGGTAGCTTTTAATATTTGTCTTCTGGTGGTGATA
GGAATTCATACATTAATTGAACTAACACATCATATTGACCTACTATTTCTATCATATTGA
CTTGATGTTTCTGCACTTCCTTGACCAAACCTAACTAAAAGTCCACGTTTGTTAAAATGT
AGTCACACATGATATAATCCAACAAAAAGTGTTCGAAATATTTTAAATTTTTGTGCATTT
TATAATCACTAAATTAATCTCTCTCTCTTCTCTTTAAAGCACTTAGCAGTGTCTGCAAAA
ACGAATCTTTTCCTACAACCTGTTAACTGACTGGACTGATGGTAACAAAGTAATTGTGGG
AGCCATGTCGGTCAAATATTTGGCATCTGCTGAAAAAATGAATGCCATTTTCAAGTTCCC
AAATTACTTCTATACTGATTTCACTTTCCAGAAATGGAGATATGAAAAGATTCTCTGGAA
TCCTTGAAAGACTTAATAGAAATACATGAGACTAAGTTAATTTTGGAACAAAATTATACT
TTTTTGTCTTTCACGGGAGTGATAACTCAGTTCTTTGCATACCTTTTAAAAATTGTAACC
TTTGAAGAGATGGTAGTATTTCATCAAGGAATATTAGATTCTTTACGTAATCAAGAGCAC
ATTCTATGGATTTAGATTTAGTGGAGTAGAATTACATAAACAGGCCATCAGTGATCACGA
GGCATATCATGAGTTTGTATTTATTTCCTGGAACATGAGAGCTAATCTTAAGTACAGACA
CCTTGCTGTGAGGAATATAAAAGTTAATGTAAAGAGTAGTCTTTTTAAGTAGATGCACTG
ATTTGTCTGTATATCTTTGAAAACATTGATTATGAGAATGTGTGGGTAGTTAATTGCAAT
TCAGAGTAATGCCAAGATGTTTGGATTCTGAGGTTTTTGGCTTGAGCTTTCTGTGAGGAC
TTCTAAAAAATATTTTGAGGCTTCTAATGAATGGTATACTAGTTTCTGTGGTTTTATATT
AAAATTTCTCTAGTATGTAAGGGCTTTAGTATTCTGGATGATATGGGCTTTTTTCATGGA
ATATGGTTGTTTTACTTAATTGAAAACATTTTTGCAGCTCATTACAAGTGTGAAAAAACA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               6-1260, gnl|bosTau2|chr29 (4356616-4355328)
               

               
               6-1260, gnl|Hg17|chr11 (85049679-85048407)
               

               
               6-1260, gnl|Mm7|chr7 (86453708-86454870)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1260, gnl|bosTau2|chr29 (4356616-4355328)
               

               
               6-1260, gnl|Hg17|chr11 (85049679-85048407)
               

               
               6-1260, gnl|Mm7|chr7 (86453708-86454870)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               sag (0.730861)
               

               
               gul (0.532765)
               

               
               ret (0.514933)
               

               
               fco (0.471624)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.730861)
               

               
               gul (0.532765)
               

               
               ret (0.514933)
               

               
               fco (0.471624)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	6-1260, gnl\|bosTau2\|chr29 (4356616-4355328)
	6-1260, gnl\|Hg17\|chr11 (85049679-85048407)
	6-1260, gnl\|Mm7\|chr7 (86453708-86454870)

	sag (0.730861)
	gul (0.532765)
	ret (0.514933)
	fco (0.471624)
	lin (0.291206)
	kid (0.259471)
	cbe (0.239234)
	mgp (0.230681)
	mas (0.210305)
	aor (0.195274)
	mga (0.160205)
	liv (0.146284)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	med (0.116252)
	ecc (0.115035)
	cbl (0.114797)
	spc (0.113366)
	eje (0.0988338)