Non-Coding RNA Search

Ss1.1-Pig3-SRG8021N07.3

Sequence:


               
               AGGAGCTGAGGGGGGAAAAGGGTAGGGTACATGATGTATTGCACTTTACTAGCCCAAGAC
AGATGAATGTGTAAAGGGTGGCGAAGTCTCATTGGAACTTATTGGGATTTACCATGGAGA
AGGCCCAGACTTGTGGCCAAAGGCCAACGCAAATAATTAGCCATTGGCCCTCTAATGGGA
CCTGTGCAGTTGAAAGAAGGAAGGGTATTTTTTGTTCATTGCCATCCTTGTGAGAAAAGG
GCAGTTTCCTGCACTTGGGAACCTGGAGCAAGTGCTCCATTTCAAACAATTCACTCACCT
GCGATTGAGGTGCTCTTGCTACTGGGTGTCTATGTGCTCTAATTCTGATTTTGGATATGT
TCTGTAAAGATTTTGACAATGAAAATGTGTTTTTCTCTGTTAAAAAATTATTAATGTATT
AGAAGTAGTATCTCTGTAGGTACAGGTCCATCTCTGCCCACAGGTAGGGATGTTTTTCTT
CAATTAAGAGATTGACACTGGGGTCTGTTGCCCAGAGCCTCCCAATTTTTAACCGTTTCT
AGGTGAAGGCAGAAAAATCCACATTAGTCACTTCTCTTCAGATACTTCAGCTGAGGTAAA
AACAAAACAAAACAAAACAAAAACAAAAACAAAAAAACAAAAAAAAACCACTTGGAATGT
TCCTCCCCACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGCTGAGGGGGGAAAAGGGTAGGGTACATGATGTATTGCACTTTACTAGCCCAAGAC
AGATGAATGTGTAAAGGGTGGCGAAGTCTCATTGGAACTTATTGGGATTTACCATGGAGA
AGGCCCAGACTTGTGGCCAAAGGCCAACGCAAATAATTAGCCATTGGCCCTCTAATGGGA
CCTGTGCAGTTGAAAGAAGGAAGGGTATTTTTTGTTCATTGCCATCCTTGTGAGAAAAGG
GCAGTTTCCTGCACTTGGGAACCTGGAGCAAGTGCTCCATTTCAAACAATTCACTCACCT
GCGATTGAGGTGCTCTTGCTACTGGGTGTCTATGTGCTCTAATTCTGATTTTGGATATGT
TCTGTAAAGATTTTGACAATGAAAATGTGTTTTTCTCTGTTAAAAAATTATTAATGTATT
AGAAGTAGTATCTCTGTAGGTACAGGTCCATCTCTGCCCACAGGTAGGGATGTTTTTCTT
CAATTAAGAGATTGACACTGGGGTCTGTTGCCCAGAGCCTCCCAATTTTTAACCGTTTCT
AGGTGAAGGCAGAAAAATCCACATTAGTCACTTCTCTTCAGATACTTCAGCTGAGGTAAA
AACAAAACAAAACAAAACAAAAACAAAAACAAAAAAACAAAAAAAAACCACTTGGAATGT
TCCTCCCCACCC

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               78-178, - strand, RNAz p=0.951596
               

               
               80-314, - strand, RNAz p=0.99763
               

               
               416-587, - strand, RNAz p=0.960128
               

               
               434-550, - strand, RNAz p=0.975687

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-178, - strand, RNAz p=0.951596
               

               
               80-314, - strand, RNAz p=0.99763
               

               
               416-587, - strand, RNAz p=0.960128
               

               
               434-550, - strand, RNAz p=0.975687

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               237-367, + strand, RNAmicro p=0.993553

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               237-367, + strand, RNAmicro p=0.993553

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-612, gnl|bosTau2|chrX (24875198-24875803)
               

               
               1-612, gnl|canFam2|chrX (55084414-55085234)
               

               
               1-612, gnl|dasNov1|scaffold_22041 (15952-15122)
               

               
               1-612, gnl|hg17|chrX (66731338-66732192)
               

               
               1-612, gnl|Hg17|chrX (66731675-66732277)
               

               
               1-612, gnl|loxAfr1|scaffold_4813 (32004-31168)
               

               
               1-612, gnl|mm7|chrX (93648882-93649717)
               

               
               1-612, gnl|Mm7|chrX (93649187-93649784)
               

               
               1-612, gnl|monDom2|scaffold_138 (320878-320036)
               

               
               1-612, gnl|oryCun1|scaffold_204192 (76741-75899)
               

               
               1-612, gnl|panTro1|chrX (68706264-68707116)
               

               
               1-612, gnl|rheMac2|chrX (66619130-66620027)
               

               
               1-612, gnl|rn3|chrX (86196649-86197480)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chrX (24875198-24875803)
               

               
               1-612, gnl|canFam2|chrX (55084414-55085234)
               

               
               1-612, gnl|dasNov1|scaffold_22041 (15952-15122)
               

               
               1-612, gnl|hg17|chrX (66731338-66732192)
               

               
               1-612, gnl|Hg17|chrX (66731675-66732277)
               

               
               1-612, gnl|loxAfr1|scaffold_4813 (32004-31168)
               

               
               1-612, gnl|mm7|chrX (93648882-93649717)
               

               
               1-612, gnl|Mm7|chrX (93649187-93649784)
               

               
               1-612, gnl|monDom2|scaffold_138 (320878-320036)
               

               
               1-612, gnl|oryCun1|scaffold_204192 (76741-75899)
               

               
               1-612, gnl|panTro1|chrX (68706264-68707116)
               

               
               1-612, gnl|rheMac2|chrX (66619130-66620027)
               

               
               1-612, gnl|rn3|chrX (86196649-86197480)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               bla (0.124347)

	78-178, - strand, RNAz p=0.951596
	80-314, - strand, RNAz p=0.99763
	416-587, - strand, RNAz p=0.960128
	434-550, - strand, RNAz p=0.975687

	1-612, gnl\|bosTau2\|chrX (24875198-24875803)
	1-612, gnl\|canFam2\|chrX (55084414-55085234)
	1-612, gnl\|dasNov1\|scaffold_22041 (15952-15122)
	1-612, gnl\|hg17\|chrX (66731338-66732192)
	1-612, gnl\|Hg17\|chrX (66731675-66732277)
	1-612, gnl\|loxAfr1\|scaffold_4813 (32004-31168)
	1-612, gnl\|mm7\|chrX (93648882-93649717)
	1-612, gnl\|Mm7\|chrX (93649187-93649784)
	1-612, gnl\|monDom2\|scaffold_138 (320878-320036)
	1-612, gnl\|oryCun1\|scaffold_204192 (76741-75899)
	1-612, gnl\|panTro1\|chrX (68706264-68707116)
	1-612, gnl\|rheMac2\|chrX (66619130-66620027)
	1-612, gnl\|rn3\|chrX (86196649-86197480)