Non-Coding RNA Search

Ss1.1-Pig3-SRG8021P07.3

Sequence:


               
               GATTTCTGTCATGGAAACCTCATTTGAGAAAGGTGTTAATAAAATTCTATTGCAAAAAAA
ATTGTTTTTTCTAGAAAAAAATAAATACAAAAAAAAAAAAAGAGAGAGATTCCAAAGTAA
TAACTCTTTTCTTGAATCAAATAAATAAATAAATAAATGTTTGCTTACTCTTTGATTAAA
TAAAATTTACTTACGTTTCTTTAAGGTATTTTAATTTTTTTAATGTCTCTGTGGAGTATT
TGTATGATACCATGATGTATATTTATGTAGAATCAAATTATATAACAGTACCAATATCAC
TATAGAAAAAAATAACATTTTAATGTATATTGTTCTAACCAATCATATTGTGAATCATTT
TGAAGTTCATTATAGCGATACTGATAAATAGTGGGATTGTCTTAATGTTTTTTTTTAATT
AACCAATATTATTTTAAACCTGATATTATCAGTTACATTCATCAGTTGGTGAGTTCTGAA
GACAACTAAATTTTATTTCAAACTGACAGAAGTATATGGTTTTAGTTCAGTGTTGAAGAA
TTTTAATACAATATTAAATTACTTGAACTGAACAGTTCCTTGTATATATTTTGCCTATTC
ACTGTTGATATGTATGTAGTAAATTGAGAGTAAAATAACACTAAAATATGGTACCAAAAG
GAAACTGTATAGGAGCAAAGTAAATAGTAGCTTTGCTGAAATAGAAACCTATGTGTAAAT
ATGCTTGGGCTTCCAGTTATAAATTTTGTAATTTTTGTCATTATTTATATCCTATTAAAA
AAAGCACACAAAATAAAATGGAAACTGTACAGCCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTCTGTCATGGAAACCTCATTTGAGAAAGGTGTTAATAAAATTCTATTGCAAAAAAA
ATTGTTTTTTCTAGAAAAAAATAAATACAAAAAAAAAAAAAGAGAGAGATTCCAAAGTAA
TAACTCTTTTCTTGAATCAAATAAATAAATAAATAAATGTTTGCTTACTCTTTGATTAAA
TAAAATTTACTTACGTTTCTTTAAGGTATTTTAATTTTTTTAATGTCTCTGTGGAGTATT
TGTATGATACCATGATGTATATTTATGTAGAATCAAATTATATAACAGTACCAATATCAC
TATAGAAAAAAATAACATTTTAATGTATATTGTTCTAACCAATCATATTGTGAATCATTT
TGAAGTTCATTATAGCGATACTGATAAATAGTGGGATTGTCTTAATGTTTTTTTTTAATT
AACCAATATTATTTTAAACCTGATATTATCAGTTACATTCATCAGTTGGTGAGTTCTGAA
GACAACTAAATTTTATTTCAAACTGACAGAAGTATATGGTTTTAGTTCAGTGTTGAAGAA
TTTTAATACAATATTAAATTACTTGAACTGAACAGTTCCTTGTATATATTTTGCCTATTC
ACTGTTGATATGTATGTAGTAAATTGAGAGTAAAATAACACTAAAATATGGTACCAAAAG
GAAACTGTATAGGAGCAAAGTAAATAGTAGCTTTGCTGAAATAGAAACCTATGTGTAAAT
ATGCTTGGGCTTCCAGTTATAAATTTTGTAATTTTTGTCATTATTTATATCCTATTAAAA
AAAGCACACAAAATAAAATGGAAACTGTACAGCCAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               633-752, - strand, RNAz p=0.58585

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               633-752, - strand, RNAz p=0.58585

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-813, gnl|bosTau2|chr5 (39250989-39250195)
               

               
               1-813, gnl|Hg17|chr12 (97641021-97640221)
               

               
               1-813, gnl|Mm7|chr10 (90529682-90530475)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-813, gnl|bosTau2|chr5 (39250989-39250195)
               

               
               1-813, gnl|Hg17|chr12 (97641021-97640221)
               

               
               1-813, gnl|Mm7|chr10 (90529682-90530475)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fco (1.8865)
               

               
               cbe (0.717703)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.8865)
               

               
               cbe (0.717703)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

	1-813, gnl\|bosTau2\|chr5 (39250989-39250195)
	1-813, gnl\|Hg17\|chr12 (97641021-97640221)
	1-813, gnl\|Mm7\|chr10 (90529682-90530475)

	fco (1.8865)
	cbe (0.717703)
	fcc (0.197785)
	fbs (0.175346)
	ret (0.128733)
	spc (0.113366)