Non-Coding RNA Search

Ss1.1-Pig3-SRG8022C04.3.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTAAGTTTAAGAATTTGTTTTGGCTTCAGTTTTTGACCTCTGCT
TTTGTGGTGCACTGTATGATGTGTGGTCCTTCTTTATAAGATGTAGCAGGATACTTTTAA
CATGCGTTGTTGATTCTGTCACATCTGTGAACTCTCAAAAGGCCTGAGGAATCTGACACA
CCTGCACCATTGGAAGAATACCCACTTAACCCTCAAGAATGAGGACACTTTGCATAGGGC
ATTGTTTCCCAACCTTTAGTCCTTGGTGAAGCAGCTTTACAGTGTTTTACCTCATTTGTG
TTCCACCTGTGCATTTCTTCAGGGTTTTTTGTTTTCCTTAAATTGAGTTACCTCTACTTA
AATATATTTAAAAAGAACACCTCAAGTCTCATGAATGGAAAACCAATATAGATTACCTTA
GATAGACACTATCTGTAAAAAATGAATTTTATTTCAGATAAATACTGTTCCTTTGGAGTA
TCTGAATTTGTGAGAGAGAAAAGCTAGCACGTGTTAAAGGGTAGTAAGCAACAGTTACAC
TTAAAATATTCAAATGAGAGTTCCCGTCATGGTACAGCAGAAACAAATCCGACTAGGAAC
CATGGGTTTCAGGTTCGATCCCTGGCTTTGCTCAGTAGGTTAAGGATCAGGCATTGCCAT
GAGTTGTGGTGTAGGTCTCAGACGTGGCTTGGATCTAGTGCTGCTGTGGCTGTGGTGTGA
GCCGGCAGCTGTAGCTCCGATTCGACCCCTAGCCTGGGGACCTCCATATCCCACGGGTGC
AGCCCTAAAAGAAAATAAATATCCAAATGAGTTGGAAGATACCTTCCTTTTGAAATACTG
CTGGGTTTGTTTTTCTATAAACCTTTGAAACTGTCACTTTGACATTGGCCAGTGGGAAAT
TATTAGAAAAGAGGTAGTAAAATACCTGATGAGCACCTATTGTGTACCAAACGCTAATTC
ATGATAAAAATAAGATGGGCACTGCTCTCAAGGAGCCTTATTAAAGATGTGAAATGGATA
TTTATGAAAAAGTCAGTGTTAGTACTCAAATAAACTGCTTAGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTAAGTTTAAGAATTTGTTTTGGCTTCAGTTTTTGACCTCTGCT
TTTGTGGTGCACTGTATGATGTGTGGTCCTTCTTTATAAGATGTAGCAGGATACTTTTAA
CATGCGTTGTTGATTCTGTCACATCTGTGAACTCTCAAAAGGCCTGAGGAATCTGACACA
CCTGCACCATTGGAAGAATACCCACTTAACCCTCAAGAATGAGGACACTTTGCATAGGGC
ATTGTTTCCCAACCTTTAGTCCTTGGTGAAGCAGCTTTACAGTGTTTTACCTCATTTGTG
TTCCACCTGTGCATTTCTTCAGGGTTTTTTGTTTTCCTTAAATTGAGTTACCTCTACTTA
AATATATTTAAAAAGAACACCTCAAGTCTCATGAATGGAAAACCAATATAGATTACCTTA
GATAGACACTATCTGTAAAAAATGAATTTTATTTCAGATAAATACTGTTCCTTTGGAGTA
TCTGAATTTGTGAGAGAGAAAAGCTAGCACGTGTTAAAGGGTAGTAAGCAACAGTTACAC
TTAAAATATTCAAATGAGAGTTCCCGTCATGGTACAGCAGAAACAAATCCGACTAGGAAC
CATGGGTTTCAGGTTCGATCCCTGGCTTTGCTCAGTAGGTTAAGGATCAGGCATTGCCAT
GAGTTGTGGTGTAGGTCTCAGACGTGGCTTGGATCTAGTGCTGCTGTGGCTGTGGTGTGA
GCCGGCAGCTGTAGCTCCGATTCGACCCCTAGCCTGGGGACCTCCATATCCCACGGGTGC
AGCCCTAAAAGAAAATAAATATCCAAATGAGTTGGAAGATACCTTCCTTTTGAAATACTG
CTGGGTTTGTTTTTCTATAAACCTTTGAAACTGTCACTTTGACATTGGCCAGTGGGAAAT
TATTAGAAAAGAGGTAGTAAAATACCTGATGAGCACCTATTGTGTACCAAACGCTAATTC
ATGATAAAAATAAGATGGGCACTGCTCTCAAGGAGCCTTATTAAAGATGTGAAATGGATA
TTTATGAAAAAGTCAGTGTTAGTACTCAAATAAACTGCTTAGCAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-557, gnl|bosTau2|chr7 (6959218-6959775)
               

               
               1-557, gnl|Hg17|chr19 (15326313-15325618)
               


               
               799-1065, gnl|bosTau2|chr7 (6959764-6960047)
               

               
               799-1065, gnl|Hg17|chr19 (15325629-15325337)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-557, gnl|bosTau2|chr7 (6959218-6959775)
               

               
               1-557, gnl|Hg17|chr19 (15326313-15325618)
               


               
               799-1065, gnl|bosTau2|chr7 (6959764-6960047)
               

               
               799-1065, gnl|Hg17|chr19 (15325629-15325337)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-557, gnl\|bosTau2\|chr7 (6959218-6959775)
	1-557, gnl\|Hg17\|chr19 (15326313-15325618)

	799-1065, gnl\|bosTau2\|chr7 (6959764-6960047)
	799-1065, gnl\|Hg17\|chr19 (15325629-15325337)

	amn (0.417711)
	pan (0.23596)
	aor (0.195274)
	sag (0.182715)
	duo (0.172801)
	tbr (0.154178)
	cag (0.151194)
	csk (0.140746)
	bla (0.124347)
	tra (0.123092)
	ecc (0.115035)
	spc (0.113366)
	jej (0.0989218)
	eje (0.0988338)