Non-Coding RNA Search

Ss1.1-Pig3-SRG8022E18.5.5

Sequence:


               
               GGGAGGTCACCTTCCTCTCCCTCACCTCCTTCTACCCCAGGACCGTGATCTCCTGGTGGT
CCTCGGGTACTGGGGGAGCCGGGCTACTGGGGGCATTGTCCTACCTGGGCCTCACCCAGG
CCGGCCTCTCCCCCCAGCACACCTTGCTGTCCATGCTGGGTATCCCCGCCCTGATGCTAG
CCAGCTATTTCCTGTTGCTCACGTCTCCTGGGTCCCAGGACCCTGGAGGGGAAGAGGAGG
CAGAGACAGCACCCCGGCAGCCCCTGATAAATAGCGAGGCCCCCGAGTTGAAGCCAGGCT
CCGGCTCACACCTGTCCCTTCAGGAAAGGTGGACTGTGTTCAAGGGCCTGCTGCATTACA
TCGTCCCCCTGGTGCTGGTTTACTTTGCTGAGTATTTCATCAACCAGGGCCTTTTTGAAC
TCCTCTTCTTCCGGAACACGTTCCTGAGTCATGCTCAACAGTACCGCTGGTACCAGATGC
TATACCAGGCTGGCGTCTTTGCCTCCCGCTCCTCTCTCCGCTGCTGTCACATCCGCCACA
CATGGGCCCTGGCCTTGCTACAGTGCCTCAACCTGGCCTTCCTGCTGGCGGACGTGTGGC
TGAGCTTCCTGCCCAGCATCTACCTCGTCTTCCTGATCATTCTGTATGAGGGGCTCCTGG
GAGGAGCGGCCTACGTGAACACCTTTCACAATATTGCCCTGGAGACCAGTGATGAGCATC
GGGAATTTGCCATGGCAACCGCCTGTATCTCCGACACCTTGGGGATCTCGCTCTCAGGGC
TCCTGGCCCTGCCTCTGCACGACTTCCTCTGCCGCCTCTCCTGACCCTCTAGCTCCTTGG
GACATAGGACACATTGACCTGGACCCACACTGACCAGTGGGCAGGTCGGACTGACCCGAG
GCCCACAGCCCGGAGCCCATGCAGGAGCTCTGCCCCCGATCCTCTCTGCATGGCTGGAAT
GTGGGAAAGTGCTGAGGCCCTGTTCCCCTCTGATGGAGGAGCAGCAGTTTTCTCCCAGTC
CCAAGCTGGTTTGGGGAATTTCTTGGTGTCATGCCCTAAGAATAAATGCCTATTTTATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGTCACCTTCCTCTCCCTCACCTCCTTCTACCCCAGGACCGTGATCTCCTGGTGGT
CCTCGGGTACTGGGGGAGCCGGGCTACTGGGGGCATTGTCCTACCTGGGCCTCACCCAGG
CCGGCCTCTCCCCCCAGCACACCTTGCTGTCCATGCTGGGTATCCCCGCCCTGATGCTAG
CCAGCTATTTCCTGTTGCTCACGTCTCCTGGGTCCCAGGACCCTGGAGGGGAAGAGGAGG
CAGAGACAGCACCCCGGCAGCCCCTGATAAATAGCGAGGCCCCCGAGTTGAAGCCAGGCT
CCGGCTCACACCTGTCCCTTCAGGAAAGGTGGACTGTGTTCAAGGGCCTGCTGCATTACA
TCGTCCCCCTGGTGCTGGTTTACTTTGCTGAGTATTTCATCAACCAGGGCCTTTTTGAAC
TCCTCTTCTTCCGGAACACGTTCCTGAGTCATGCTCAACAGTACCGCTGGTACCAGATGC
TATACCAGGCTGGCGTCTTTGCCTCCCGCTCCTCTCTCCGCTGCTGTCACATCCGCCACA
CATGGGCCCTGGCCTTGCTACAGTGCCTCAACCTGGCCTTCCTGCTGGCGGACGTGTGGC
TGAGCTTCCTGCCCAGCATCTACCTCGTCTTCCTGATCATTCTGTATGAGGGGCTCCTGG
GAGGAGCGGCCTACGTGAACACCTTTCACAATATTGCCCTGGAGACCAGTGATGAGCATC
GGGAATTTGCCATGGCAACCGCCTGTATCTCCGACACCTTGGGGATCTCGCTCTCAGGGC
TCCTGGCCCTGCCTCTGCACGACTTCCTCTGCCGCCTCTCCTGACCCTCTAGCTCCTTGG
GACATAGGACACATTGACCTGGACCCACACTGACCAGTGGGCAGGTCGGACTGACCCGAG
GCCCACAGCCCGGAGCCCATGCAGGAGCTCTGCCCCCGATCCTCTCTGCATGGCTGGAAT
GTGGGAAAGTGCTGAGGCCCTGTTCCCCTCTGATGGAGGAGCAGCAGTTTTCTCCCAGTC
CCAAGCTGGTTTGGGGAATTTCTTGGTGTCATGCCCTAAGAATAAATGCCTATTTTATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               O95086_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               O95086_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               38-187, + strand, RNAz p=0.774612
               

               
               903-1021, + strand, RNAz p=0.625687

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-187, + strand, RNAz p=0.774612
               

               
               903-1021, + strand, RNAz p=0.625687

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of AF077973, +
               

               
               5' of AF077973, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF077973, +
               

               
               5' of AF077973, +

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               38-187, gnl|bosTau2|chr25 (24999164-24999015)
               

               
               38-187, gnl|Hg17|chr16 (28405315-28405166)
               

               
               38-187, gnl|Mm7|chr7 (122675877-122675728)
               


               
               469-581, gnl|bosTau2|chr25 (24996183-24996069)
               

               
               469-581, gnl|Hg17|chr16 (28401021-28400907)
               

               
               469-581, gnl|Mm7|chr7 (122671646-122671534)
               


               
               703-1080, gnl|bosTau2|chr25 (24992761-24992385)
               

               
               703-1080, gnl|Hg17|chr16 (28396459-28396106)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-187, gnl|bosTau2|chr25 (24999164-24999015)
               

               
               38-187, gnl|Hg17|chr16 (28405315-28405166)
               

               
               38-187, gnl|Mm7|chr7 (122675877-122675728)
               


               
               469-581, gnl|bosTau2|chr25 (24996183-24996069)
               

               
               469-581, gnl|Hg17|chr16 (28401021-28400907)
               

               
               469-581, gnl|Mm7|chr7 (122671646-122671534)
               


               
               703-1080, gnl|bosTau2|chr25 (24992761-24992385)
               

               
               703-1080, gnl|Hg17|chr16 (28396459-28396106)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eye (0.170503)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	38-187, + strand, RNAz p=0.774612
	903-1021, + strand, RNAz p=0.625687

	38-187, gnl\|bosTau2\|chr25 (24999164-24999015)
	38-187, gnl\|Hg17\|chr16 (28405315-28405166)
	38-187, gnl\|Mm7\|chr7 (122675877-122675728)

	469-581, gnl\|bosTau2\|chr25 (24996183-24996069)
	469-581, gnl\|Hg17\|chr16 (28401021-28400907)
	469-581, gnl\|Mm7\|chr7 (122671646-122671534)

	703-1080, gnl\|bosTau2\|chr25 (24992761-24992385)
	703-1080, gnl\|Hg17\|chr16 (28396459-28396106)

	eye (0.170503)
	nco (0.161734)
	pty (0.142714)
	pla (0.133672)
	cly (0.120642)
	ecc (0.115035)