Non-Coding RNA Search

Ss1.1-Pig3-SRG8022G06.5.5

Sequence:


               
               TTTTTTACAGTGAGACAGTGGAGTTGGTCTTGGCTGCCGTAGGAGCTCTTCTTTTCTGCG
GATTCATCATCTATGACACACACTCCCTGATGCATAGGCTGTCACCTGAAGAGTATGTAT
TAGCTGCCATCAGCCTCTACTTAGATATCATCAACCTATTCCTGCACCTGTTGCGGGTTT
TGGAAGCAGTTAATAAAAAGTGATTGAAAGCAGTATATAGAAATGGATTCATTAAGTAAT
AAAGTTCAAAATGTAATCAATTATGCTATGTACTTCTGAGCTATTACTGTAAAATAGTAA
GATAGTGACATTGTATTAGTATTACATAATGGAAATTGTAATTATATGTAATATATATTA
AATATATAATTACTAGATTATATAACAGTAATATAAATCTTGCTATTTATGTTGTCTCAT
TTCTAAATCCTTGATTTGGAATCTGAGATAAGAGATAACAAAATTCTGTTTTTGAATTTT
TTTCAATCTTAAATTTGCCATATATAGATGGTTCATTTGCAATTCAAAAATAATTTCATG
GGACTTCTCTTGTAGTGCTGTGGTTTGTGGATCCAGTGTTGTCACTGCAGCGGCTCAGGT
TCCTGCTGTAGTGTAGATTTAGTCCCTCACCCAGGAACTTCCATATGCTGTAGGTGTGGC
CGTAAATAAATAGTAGACTTTCTACTACTAAATAAGTAAAACTTCATGAGTAGATAAATG
CTATCAATTTACCTTTGTCTAGTGATTTTATCTAACTTTCTCTTAAGTAGATAATATTAG
ATATGATTTTGATTTTAAAGTACTTGTGTCTTTACCATTATTTATACTTTAGTATAAATC
TCCTTTTACCATATTTTAGTCTTATTTAGAAAGGAAAAAAGTATAAAAGATTAATTCCAC
AAAGTTATTCAGTATTATAATAAAATTATTTTAAAATGTTAATGATATTTCATTATAAAA
TGATGTATTAAAAATTAAAAGTCTGCTTCACAGATATTTTGACATCAAATTTAACATTTG
GTACAAGTATCATTTAAAAATGACAGCAGTTCCCTGGCCCAGGAACTTCCACATGGCACA
AGTACTGCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTACAGTGAGACAGTGGAGTTGGTCTTGGCTGCCGTAGGAGCTCTTCTTTTCTGCG
GATTCATCATCTATGACACACACTCCCTGATGCATAGGCTGTCACCTGAAGAGTATGTAT
TAGCTGCCATCAGCCTCTACTTAGATATCATCAACCTATTCCTGCACCTGTTGCGGGTTT
TGGAAGCAGTTAATAAAAAGTGATTGAAAGCAGTATATAGAAATGGATTCATTAAGTAAT
AAAGTTCAAAATGTAATCAATTATGCTATGTACTTCTGAGCTATTACTGTAAAATAGTAA
GATAGTGACATTGTATTAGTATTACATAATGGAAATTGTAATTATATGTAATATATATTA
AATATATAATTACTAGATTATATAACAGTAATATAAATCTTGCTATTTATGTTGTCTCAT
TTCTAAATCCTTGATTTGGAATCTGAGATAAGAGATAACAAAATTCTGTTTTTGAATTTT
TTTCAATCTTAAATTTGCCATATATAGATGGTTCATTTGCAATTCAAAAATAATTTCATG
GGACTTCTCTTGTAGTGCTGTGGTTTGTGGATCCAGTGTTGTCACTGCAGCGGCTCAGGT
TCCTGCTGTAGTGTAGATTTAGTCCCTCACCCAGGAACTTCCATATGCTGTAGGTGTGGC
CGTAAATAAATAGTAGACTTTCTACTACTAAATAAGTAAAACTTCATGAGTAGATAAATG
CTATCAATTTACCTTTGTCTAGTGATTTTATCTAACTTTCTCTTAAGTAGATAATATTAG
ATATGATTTTGATTTTAAAGTACTTGTGTCTTTACCATTATTTATACTTTAGTATAAATC
TCCTTTTACCATATTTTAGTCTTATTTAGAAAGGAAAAAAGTATAAAAGATTAATTCCAC
AAAGTTATTCAGTATTATAATAAAATTATTTTAAAATGTTAATGATATTTCATTATAAAA
TGATGTATTAAAAATTAAAAGTCTGCTTCACAGATATTTTGACATCAAATTTAACATTTG
GTACAAGTATCATTTAAAAATGACAGCAGTTCCCTGGCCCAGGAACTTCCACATGGCACA
AGTACTGCCAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               29-286, gnl|bosTau2|chr29 (16428468-16428215)
               

               
               29-286, gnl|Hg17|chr12 (64818181-64817864)
               

               
               29-286, gnl|Mm7|chr10 (119618868-119619127)
               


               
               769-1019, gnl|bosTau2|chr29 (16428250-16427995)
               

               
               769-1019, gnl|Hg17|chr12 (64817894-64817108)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-286, gnl|bosTau2|chr29 (16428468-16428215)
               

               
               29-286, gnl|Hg17|chr12 (64818181-64817864)
               

               
               29-286, gnl|Mm7|chr10 (119618868-119619127)
               


               
               769-1019, gnl|bosTau2|chr29 (16428250-16427995)
               

               
               769-1019, gnl|Hg17|chr12 (64817894-64817108)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               rec (0.346141)
               

               
               cte (0.29274)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               mgm (0.180343)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               cte (0.29274)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               mgm (0.180343)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

	29-286, gnl\|bosTau2\|chr29 (16428468-16428215)
	29-286, gnl\|Hg17\|chr12 (64818181-64817864)
	29-286, gnl\|Mm7\|chr10 (119618868-119619127)

	769-1019, gnl\|bosTau2\|chr29 (16428250-16427995)
	769-1019, gnl\|Hg17\|chr12 (64817894-64817108)

	rec (0.346141)
	cte (0.29274)
	tra (0.246184)
	pan (0.23596)
	mgm (0.180343)
	nco (0.161734)
	isp (0.150376)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)