Non-Coding RNA Search

Ss1.1-Pig3-SRG8022H01.3

Sequence:


               
               AAAAAACAAAAACAAAAACAAAACAAAAAAAAAAAAAAAGACCAGAGACGTGAAGAGGAG
AAGGCTCCTGTTCTATTACCTCACTCATTCACACGTGAGCGACGCACAGACATCCGAGAG
GGCCAGCATCCCAGAACCAGCTGAGCACCACCACTCAGACTGCTTGTTGGACCAATACTA
CAGACGTTTTCGTTTAAACCAATACAGGTGCATTTAAACCACGACTTTGGGGGCGATTTG
TGTGTAGCGACGGGGGAGGGGGGGAATCAAAGTGAAAGAGTGAGCACTGGAAATACTTTT
TAAAGGGAAAAAAAAAAAAACCTATGAAAACACAAGGGGGAAAAAAAAAAGGAAATTAAT
ATGGAAAATCCAAGTGAAAGAAGACCGTTCAGCACTTAATCCTCAGGTCCCCACTTAGTC
CGGCCTGAGCTAATTTATTTGAGCGCAGAGTGTAAGATGTAATTCTGATGGTGGCTATAC
TCACTCCAGATAAATTTCATACTCTTTTGTCTTTGCAGATTCCATTGTGGACAGTAATAC
GCAGTTACAGGGTGTAGTCTGTTTAGATTCCGTAGTTCGTGGGTATCAGTTGCAGTAGAG
GTGTGGCATCGTGACACTCTTTTGCTAACGGGCACCACTTCCGATCACCCTGTACATACA
TAAGCCTCAAGGCACAATCACTGTTTGAGATTTAAAACTATTAGTGTGTTTGTTTGGTCC
AGAAACTGAGACAATCACATGACAGTCACCACGAGGAGAGAAACGAAAAAATTTTAAAAA
CCCACAAAAACACAAAAAAAAGTTAAAAAACAAAAACAAAGAAAAAAAAAAGGTCTAATA
AGAACTTTGGTACAGGAACTTTTTTGTAATATACATGTATGAATTGTTCATCGAGTTTTT
ATATTAATTTTAATTTGCTGCTAAGCAAAGACTAGGGACAGGCAAAGATAATTTATGGCA
AAGTGTTTAAATTGTTTATACATAAATAAAGTCTCTAAAACTCCTGCTGGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AATCCCTTAACCGGCCCTTCTAAAAAATCCAAGCTTACTTACCCTTCCTTGCAACGTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAACAAAAACAAAAACAAAACAAAAAAAAAAAAAAAGACCAGAGACGTGAAGAGGAG
AAGGCTCCTGTTCTATTACCTCACTCATTCACACGTGAGCGACGCACAGACATCCGAGAG
GGCCAGCATCCCAGAACCAGCTGAGCACCACCACTCAGACTGCTTGTTGGACCAATACTA
CAGACGTTTTCGTTTAAACCAATACAGGTGCATTTAAACCACGACTTTGGGGGCGATTTG
TGTGTAGCGACGGGGGAGGGGGGGAATCAAAGTGAAAGAGTGAGCACTGGAAATACTTTT
TAAAGGGAAAAAAAAAAAAACCTATGAAAACACAAGGGGGAAAAAAAAAAGGAAATTAAT
ATGGAAAATCCAAGTGAAAGAAGACCGTTCAGCACTTAATCCTCAGGTCCCCACTTAGTC
CGGCCTGAGCTAATTTATTTGAGCGCAGAGTGTAAGATGTAATTCTGATGGTGGCTATAC
TCACTCCAGATAAATTTCATACTCTTTTGTCTTTGCAGATTCCATTGTGGACAGTAATAC
GCAGTTACAGGGTGTAGTCTGTTTAGATTCCGTAGTTCGTGGGTATCAGTTGCAGTAGAG
GTGTGGCATCGTGACACTCTTTTGCTAACGGGCACCACTTCCGATCACCCTGTACATACA
TAAGCCTCAAGGCACAATCACTGTTTGAGATTTAAAACTATTAGTGTGTTTGTTTGGTCC
AGAAACTGAGACAATCACATGACAGTCACCACGAGGAGAGAAACGAAAAAATTTTAAAAA
CCCACAAAAACACAAAAAAAAGTTAAAAAACAAAAACAAAGAAAAAAAAAAGGTCTAATA
AGAACTTTGGTACAGGAACTTTTTTGTAATATACATGTATGAATTGTTCATCGAGTTTTT
ATATTAATTTTAATTTGCTGCTAAGCAAAGACTAGGGACAGGCAAAGATAATTTATGGCA
AAGTGTTTAAATTGTTTATACATAAATAAAGTCTCTAAAACTCCTGCTGGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AATCCCTTAACCGGCCCTTCTAAAAAATCCAAGCTTACTTACCCTTCCTTGCAACGTCAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               389-505, - strand, RNAz p=0.845777
               

               
               545-662, - strand, RNAz p=0.645361

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-505, - strand, RNAz p=0.845777
               

               
               545-662, - strand, RNAz p=0.645361

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-1011, gnl|bosTau2|chr7 (54003175-54004166)
               

               
               6-1011, gnl|Hg17|chr5 (167622766-167623740)
               

               
               6-1011, gnl|Mm7|chr11 (35861367-35860376)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1011, gnl|bosTau2|chr7 (54003175-54004166)
               

               
               6-1011, gnl|Hg17|chr5 (167622766-167623740)
               

               
               6-1011, gnl|Mm7|chr11 (35861367-35860376)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	389-505, - strand, RNAz p=0.845777
	545-662, - strand, RNAz p=0.645361

	6-1011, gnl\|bosTau2\|chr7 (54003175-54004166)
	6-1011, gnl\|Hg17\|chr5 (167622766-167623740)
	6-1011, gnl\|Mm7\|chr11 (35861367-35860376)