Ss1.1-Pig3-SRG8022I19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGATGGCAAGACCAGGCTGCCATGGCAGGCAAGCACTGGGATTTTAATACACAGCACAA CACTTGAGACAATGAGAAAGGCAGGCAGGAACACAGGCCGGAACATTCCACAGTCCAGGG ACAGTCTTTAGGAAAGTACATTTGTGCATTTCTCCAGAACACTCAGTAGTAAGGCCGTCT GGGGTTGTTCAGGGGGTTGGGCCGGAAGCGGTAGGCCAGCATCATCCTCTTGCGAAAGGC CTCGTACTCATCATCTTCCTTGGAGAGCTCAGCTGGCCGGTCAATGCCAAAGCCAGCACC ATCTACTGTAGTGGTGCCCTTGTTGACTGGATTCTTGATGCCCTGGCCTTCTGAACCCAG GCCATCGCCCTCCTTCCAGCCCATCTTCATTAGCATCTGGTAGCCGATGTTCTCTATCGT CAGCTTGAACTCTTTGTACTCTGAATAGTCAGGCTCCCGGCCCTCCTTCAGGGCCTTGAA GGTCTCCATGAACTTCTCCAGCTCGTCTGGTGGCAGGAAGTCTCCAATGAAGTGCTTGCC CCGGCCCATCTTCGTCAGCTGCTCTGCCCATTCCCGAGTCTTGTCCATCTCCATGCGCCG CAGCTGGTGCTCCCAGGTGCCCAGCTCGCTGTCCACCTCCTCGTCGCTGTCATAGCCATG CTGGTGCTGCTGCAGCGCCTTCTCCCACAGCAGCTGCATGTCCTGCATTGCACGCTTGTG CTGCATGATCATGTCGTACATTTGCTGCATCTCCTGCTGCTCCTTCAGCTGCTTCTTCTG GGCATCCGACAGCTCCGTGACACCTACCAGACCCACGGGCTTCCCCTTCTCATAGCCGAG ACCCTTGAGGTCCTGAACTGACAGAGGTGAGGGAGAGGCGTCCACATCCCTCTGCACCAG CTCAGCAGGCGGGAGCTCTACCTTGTCCTCTTCAGGCCCCCATCGGCTCTTTCGCTTCCT CTTCATAGTGGCTGTGCTGGCCAGCTTCCCCGGGGCAGCTGAAGATGGGTTGATGGTGGG CAAGGGGGCAGATGAGATGGGGCAGGCAGTGGCAGTGGGCAGGGACCCCAAGGGGGTCTC AGGAGGAGACGTATGCTTCAGTCCAAGGTCAGGTGCCATGGGGGGGCCTGTGGGACCAGC CTTGGCTTTCCGGAACTCCTCTAGCTTCTGGCGGTAGTACTTGTACCCTTGGCTGTTAGG TTCATACAGAAAGCTCTGGAGTCCACACCAGAGGAAGTTCTGGAGGGCAGCTCCACACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGATGGCAAGACCAGGCTGCCATGGCAGGCAAGCACTGGGATTTTAATACACAGCACAA CACTTGAGACAATGAGAAAGGCAGGCAGGAACACAGGCCGGAACATTCCACAGTCCAGGG ACAGTCTTTAGGAAAGTACATTTGTGCATTTCTCCAGAACACTCAGTAGTAAGGCCGTCT GGGGTTGTTCAGGGGGTTGGGCCGGAAGCGGTAGGCCAGCATCATCCTCTTGCGAAAGGC CTCGTACTCATCATCTTCCTTGGAGAGCTCAGCTGGCCGGTCAATGCCAAAGCCAGCACC ATCTACTGTAGTGGTGCCCTTGTTGACTGGATTCTTGATGCCCTGGCCTTCTGAACCCAG GCCATCGCCCTCCTTCCAGCCCATCTTCATTAGCATCTGGTAGCCGATGTTCTCTATCGT CAGCTTGAACTCTTTGTACTCTGAATAGTCAGGCTCCCGGCCCTCCTTCAGGGCCTTGAA GGTCTCCATGAACTTCTCCAGCTCGTCTGGTGGCAGGAAGTCTCCAATGAAGTGCTTGCC CCGGCCCATCTTCGTCAGCTGCTCTGCCCATTCCCGAGTCTTGTCCATCTCCATGCGCCG CAGCTGGTGCTCCCAGGTGCCCAGCTCGCTGTCCACCTCCTCGTCGCTGTCATAGCCATG CTGGTGCTGCTGCAGCGCCTTCTCCCACAGCAGCTGCATGTCCTGCATTGCACGCTTGTG CTGCATGATCATGTCGTACATTTGCTGCATCTCCTGCTGCTCCTTCAGCTGCTTCTTCTG GGCATCCGACAGCTCCGTGACACCTACCAGACCCACGGGCTTCCCCTTCTCATAGCCGAG ACCCTTGAGGTCCTGAACTGACAGAGGTGAGGGAGAGGCGTCCACATCCCTCTGCACCAG CTCAGCAGGCGGGAGCTCTACCTTGTCCTCTTCAGGCCCCCATCGGCTCTTTCGCTTCCT CTTCATAGTGGCTGTGCTGGCCAGCTTCCCCGGGGCAGCTGAAGATGGGTTGATGGTGGG CAAGGGGGCAGATGAGATGGGGCAGGCAGTGGCAGTGGGCAGGGACCCCAAGGGGGTCTC AGGAGGAGACGTATGCTTCAGTCCAAGGTCAGGTGCCATGGGGGGGCCTGTGGGACCAGC CTTGGCTTTCCGGAACTCCTCTAGCTTCTGGCGGTAGTACTTGTACCCTTGGCTGTTAGG TTCATACAGAAAGCTCTGGAGTCCACACCAGAGGAAGTTCTGGAGGGCAGCTCCACACAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 635-752, + strand, RNAz p=0.510976 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 635-752, + strand, RNAz p=0.510976 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 2-196, gnl|bosTau2|chr7 (4168408-4168210) | |
| 2-196, gnl|canFam2|chr20 (46925772-46925905) | |
| 2-196, gnl|echTel1|scaffold_300637 (44487-44368) | |
| 2-196, gnl|galGal2|chr28 (2981182-2981309) | |
| 2-196, gnl|Hg17|chr19 (19248303-19248490) | |
| 2-196, gnl|hg17|chr5 (130359728-130359854) | |
| 2-196, gnl|mm7|chr6 (105159238-105159122) | |
| 2-196, gnl|Mm7|chr8 (68527082-68526899) | |
| 2-196, gnl|oryCun1|scaffold_185208 (25541-25432) | |
| 2-196, gnl|panTro1|chr4 (136702010-136702136) | |
| 2-196, gnl|rheMac2|chr6 (127428559-127428685) | |
| 2-196, gnl|rn3|chr16 (19836081-19835962) | |
| 2-196, gnl|xenTro1|scaffold_595 (171347-171211) | |
| 319-473, gnl|bosTau2|chr7 (4167477-4167323) | |
| 319-473, gnl|Hg17|chr19 (19249542-19249696) | |
| 319-473, gnl|Mm7|chr8 (68526360-68526201) | |
| 575-752, gnl|bosTau2|chr7 (4166066-4165889) | |
| 575-752, gnl|canFam2|chr20 (46923482-46923660) | |
| 575-752, gnl|danRer3|chrNA (88826935-88827114) | |
| 575-752, gnl|galGal2|chr28 (2977694-2977868) | |
| 575-752, gnl|hg17|chr12 (72851317-72851469) | |
| 575-752, gnl|Hg17|chr19 (19251024-19251201) | |
| 575-752, gnl|mm7|chr6 (105159791-105159612) | |
| 575-752, gnl|Mm7|chr8 (68525271-68525094) | |
| 575-752, gnl|monDom2|scaffold_122 (1993700-1993522) | |
| 575-752, gnl|oryCun1|scaffold_185208 (26102-25923) | |
| 575-752, gnl|panTro1|chr10 (74576352-74576504) | |
| 575-752, gnl|rheMac2|chr11 (71204983-71205135) | |
| 575-752, gnl|rn3|chr16 (19837836-19837663) | |
| 575-752, gnl|tetNig1|chr15 (4798742-4798921) | |
| 575-752, gnl|xenTro1|scaffold_595 (177654-177476) | |
| 858-1215, gnl|bosTau2|chr7 (4155589-4155232) | |
| 858-1215, gnl|Hg17|chr19 (19268798-19269155) | |
| 858-1215, gnl|Mm7|chr8 (68520298-68519935) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-196, gnl|bosTau2|chr7 (4168408-4168210) | |
| 2-196, gnl|canFam2|chr20 (46925772-46925905) | |
| 2-196, gnl|echTel1|scaffold_300637 (44487-44368) | |
| 2-196, gnl|galGal2|chr28 (2981182-2981309) | |
| 2-196, gnl|Hg17|chr19 (19248303-19248490) | |
| 2-196, gnl|hg17|chr5 (130359728-130359854) | |
| 2-196, gnl|mm7|chr6 (105159238-105159122) | |
| 2-196, gnl|Mm7|chr8 (68527082-68526899) | |
| 2-196, gnl|oryCun1|scaffold_185208 (25541-25432) | |
| 2-196, gnl|panTro1|chr4 (136702010-136702136) | |
| 2-196, gnl|rheMac2|chr6 (127428559-127428685) | |
| 2-196, gnl|rn3|chr16 (19836081-19835962) | |
| 2-196, gnl|xenTro1|scaffold_595 (171347-171211) | |
| 319-473, gnl|bosTau2|chr7 (4167477-4167323) | |
| 319-473, gnl|Hg17|chr19 (19249542-19249696) | |
| 319-473, gnl|Mm7|chr8 (68526360-68526201) | |
| 575-752, gnl|bosTau2|chr7 (4166066-4165889) | |
| 575-752, gnl|canFam2|chr20 (46923482-46923660) | |
| 575-752, gnl|danRer3|chrNA (88826935-88827114) | |
| 575-752, gnl|galGal2|chr28 (2977694-2977868) | |
| 575-752, gnl|hg17|chr12 (72851317-72851469) | |
| 575-752, gnl|Hg17|chr19 (19251024-19251201) | |
| 575-752, gnl|mm7|chr6 (105159791-105159612) | |
| 575-752, gnl|Mm7|chr8 (68525271-68525094) | |
| 575-752, gnl|monDom2|scaffold_122 (1993700-1993522) | |
| 575-752, gnl|oryCun1|scaffold_185208 (26102-25923) | |
| 575-752, gnl|panTro1|chr10 (74576352-74576504) | |
| 575-752, gnl|rheMac2|chr11 (71204983-71205135) | |
| 575-752, gnl|rn3|chr16 (19837836-19837663) | |
| 575-752, gnl|tetNig1|chr15 (4798742-4798921) | |
| 575-752, gnl|xenTro1|scaffold_595 (177654-177476) | |
| 858-1215, gnl|bosTau2|chr7 (4155589-4155232) | |
| 858-1215, gnl|Hg17|chr19 (19268798-19269155) | |
| 858-1215, gnl|Mm7|chr8 (68520298-68519935) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ece (0.45861) | |
| lnt (0.284616) | |
| mas (0.210305) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| pty (0.142714) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| lnt (0.284616) | |
| mas (0.210305) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| pty (0.142714) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| nbm (0.0993246) |