Non-Coding RNA Search

Ss1.1-Pig3-SRG8022N10.3

Sequence:


               
               GTGACTCTGCGCTCGCACCGGAGACAGCCTCGTCTCCAGTGGGGGTGGACACACTGCCAG
CACCGCATGCCGGACGCCAGGATGTGCTTGGAGGGACATGACACAGTCCGGTGTGACGGA
TAGGGACAGACGTGACGCCGTCCGGCCTTCCTGAACACTCTCGGCTGGCCCCGCGGGGGA
GCTGCCACACCCAGCGTCTGTTCCTTTGCCTTCCTGAAGGAGCACGTGCATGACTGCTGC
TCTCTGGACCCCATAACCCTCAAACGACAAGAGATGGTGCTACCCATCTCATGCCTGGGC
CTTGGACCCGGACTTCTTCAAGTCCTCCTAGCTCTGACTCAAGAATGATCTAGCTTCAAG
AAAAGCAAGCAGGTAGTAGTGCTTCGGAAAAATTGAGTCAGTATCTAATGGATAGTTGAT
ATCTGTCACTACACAGCATTTTATATACTGTTAAGTGAAACTGCAATACAATCTAAGTTT
ATTTTGGGAGTGTTTGCTGTATAATTGGATTTCATAAAATGTTTAGAGATGCAATAGGCA
TGACTTTGAGTAGATAATGAAAGAAATTGCAAAATGCTCATTGATTCATGATGTGGTTTC
ATCCTAGCTTGGGCAAACCATGCAGTATTTAATAAATAGTAGCAGAATATTTACTATTGA
AGCTTGAAAAGATGTGAGTTCTTTGTGTGCAATTTTTCATTTATGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACTCTGCGCTCGCACCGGAGACAGCCTCGTCTCCAGTGGGGGTGGACACACTGCCAG
CACCGCATGCCGGACGCCAGGATGTGCTTGGAGGGACATGACACAGTCCGGTGTGACGGA
TAGGGACAGACGTGACGCCGTCCGGCCTTCCTGAACACTCTCGGCTGGCCCCGCGGGGGA
GCTGCCACACCCAGCGTCTGTTCCTTTGCCTTCCTGAAGGAGCACGTGCATGACTGCTGC
TCTCTGGACCCCATAACCCTCAAACGACAAGAGATGGTGCTACCCATCTCATGCCTGGGC
CTTGGACCCGGACTTCTTCAAGTCCTCCTAGCTCTGACTCAAGAATGATCTAGCTTCAAG
AAAAGCAAGCAGGTAGTAGTGCTTCGGAAAAATTGAGTCAGTATCTAATGGATAGTTGAT
ATCTGTCACTACACAGCATTTTATATACTGTTAAGTGAAACTGCAATACAATCTAAGTTT
ATTTTGGGAGTGTTTGCTGTATAATTGGATTTCATAAAATGTTTAGAGATGCAATAGGCA
TGACTTTGAGTAGATAATGAAAGAAATTGCAAAATGCTCATTGATTCATGATGTGGTTTC
ATCCTAGCTTGGGCAAACCATGCAGTATTTAATAAATAGTAGCAGAATATTTACTATTGA
AGCTTGAAAAGATGTGAGTTCTTTGTGTGCAATTTTTCATTTATGCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               342-580, + strand, RNAz p=0.991528

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               342-580, + strand, RNAz p=0.991528

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               433-571, + strand, RNAmicro p=0.999945

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               433-571, + strand, RNAmicro p=0.999945

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               342-708, gnl|bosTau2|chr15 (38275240-38274874)
               

               
               342-708, gnl|Hg17|chr11 (33332452-33332813)
               

               
               342-708, gnl|Mm7|chr2 (104279862-104279499)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               342-708, gnl|bosTau2|chr15 (38275240-38274874)
               

               
               342-708, gnl|Hg17|chr11 (33332452-33332813)
               

               
               342-708, gnl|Mm7|chr2 (104279862-104279499)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tra (0.123092)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)
               

               
               jca (0.11396)

	342-708, gnl\|bosTau2\|chr15 (38275240-38274874)
	342-708, gnl\|Hg17\|chr11 (33332452-33332813)
	342-708, gnl\|Mm7\|chr2 (104279862-104279499)