Non-Coding RNA Search

Ss1.1-Pig3-SRG8022O04.3

Sequence:


               
               CATTAGTCATTTTCTTTTTGACATAGTATCTGGCACACAAAGTGGGTTAGTACTACAGTA
TTCATGTTACTTTAAGTACTGAGTATGCAGGTTTCCTGGTACCATTGAGTTGCTGCTATT
AAAGCTCACACATGAAATGGCTAAAAGTTACAAGTGTGCGAATTATGACTGCGTGAGCCT
TAGAAAGTAAACTGTATAAAGAGCAACACATGAGCTGTCAAACAGTGTTAGGTGTGTGTT
TATATGTACAGATTTGTGCGTAGTGATCGTTTTATTTAAGTTGATATGCAGTCTACTCAT
AGTTTCATTATCTAGCAATTTTGTACAAAAATAGCAATTAATTTGTAAACACTGCCAGAA
TATTTTCTAGCTGGTTTGTAATTTTTTAAGAGTGTTATTTTGTTTTTGGTTTTTGTTGTT
GTTGTGGTGGTTCTTGTGTTCATTTTTGTTATACGTGTAGATCTGTAAATACAATTGCAG
TATTTAAAGCTTTAGCTTTCAGGAAAAAGAAAGTCAGAACTCAGCGTGTGCATGACAACT
CGTGTTACGAGAGGAGGGTTTGAAGGAAGATGCCTTGCAGAGTGAGTCAGGTGGCAATTG
TCAGATCGTGGGAATTTCTTTTCCTATGGGGTACGTGATTTTGTCAAAAGGAAGTATTTC
TCCCAAAAGTGGGAGTAGGCAAACTACTAATCAGTTTAGCTTTGTGTTGTATGCTAGTTT
AAAAAAGAAAATATGTAATATAATGTAAAAAAAAAAAAAGCTTTTATGATGGATTTTGTA
AATAGATTTGTTACAGGGTAACCTGTTCTCTAGCTGTGATCTTACCACTTCAAATGGGTG
TAATTTGAATAAATTTTGTATGGTAAAGGATCAATAAAATAATTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTAGTCATTTTCTTTTTGACATAGTATCTGGCACACAAAGTGGGTTAGTACTACAGTA
TTCATGTTACTTTAAGTACTGAGTATGCAGGTTTCCTGGTACCATTGAGTTGCTGCTATT
AAAGCTCACACATGAAATGGCTAAAAGTTACAAGTGTGCGAATTATGACTGCGTGAGCCT
TAGAAAGTAAACTGTATAAAGAGCAACACATGAGCTGTCAAACAGTGTTAGGTGTGTGTT
TATATGTACAGATTTGTGCGTAGTGATCGTTTTATTTAAGTTGATATGCAGTCTACTCAT
AGTTTCATTATCTAGCAATTTTGTACAAAAATAGCAATTAATTTGTAAACACTGCCAGAA
TATTTTCTAGCTGGTTTGTAATTTTTTAAGAGTGTTATTTTGTTTTTGGTTTTTGTTGTT
GTTGTGGTGGTTCTTGTGTTCATTTTTGTTATACGTGTAGATCTGTAAATACAATTGCAG
TATTTAAAGCTTTAGCTTTCAGGAAAAAGAAAGTCAGAACTCAGCGTGTGCATGACAACT
CGTGTTACGAGAGGAGGGTTTGAAGGAAGATGCCTTGCAGAGTGAGTCAGGTGGCAATTG
TCAGATCGTGGGAATTTCTTTTCCTATGGGGTACGTGATTTTGTCAAAAGGAAGTATTTC
TCCCAAAAGTGGGAGTAGGCAAACTACTAATCAGTTTAGCTTTGTGTTGTATGCTAGTTT
AAAAAAGAAAATATGTAATATAATGTAAAAAAAAAAAAAGCTTTTATGATGGATTTTGTA
AATAGATTTGTTACAGGGTAACCTGTTCTCTAGCTGTGATCTTACCACTTCAAATGGGTG
TAATTTGAATAAATTTTGTATGGTAAAGGATCAATAAAATAATTTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               92-528, gnl|bosTau2|chr18 (8600779-8601202)
               

               
               92-528, gnl|Hg17|chr16 (81069727-81069295)
               

               
               92-528, gnl|Mm7|chr8 (116727049-116725745)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-528, gnl|bosTau2|chr18 (8600779-8601202)
               

               
               92-528, gnl|Hg17|chr16 (81069727-81069295)
               

               
               92-528, gnl|Mm7|chr8 (116727049-116725745)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               mga (0.480615)
               

               
               lin (0.436808)
               

               
               nms (0.213858)
               

               
               fco (0.157208)
               

               
               spl (0.143184)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.480615)
               

               
               lin (0.436808)
               

               
               nms (0.213858)
               

               
               fco (0.157208)
               

               
               spl (0.143184)

	92-528, gnl\|bosTau2\|chr18 (8600779-8601202)
	92-528, gnl\|Hg17\|chr16 (81069727-81069295)
	92-528, gnl\|Mm7\|chr8 (116727049-116725745)

	mga (0.480615)
	lin (0.436808)
	nms (0.213858)
	fco (0.157208)
	spl (0.143184)