Ss1.1-Pig3-SRG8022P02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCCGCCGCTGGGCCTCCGGCAGCTACATCCTTGGCCGGGGCCGGGTCCGCGCCCCGCG CCCCGCGCGGCCCCGCCATGGTGTCCTGGATCATCTCTCGCCTGGTGGTGCTCATCTTTG GCACCCTGTACCCCGCCTATTCTTCCTACAAGGCCGTGAAGACGAAAAACGTGAAGGAAT ATGTGAAGTGGATGATGTACTGGATCGTCTTTGCCTTCTTCACCACGGCTGAGACCCTCA CAGATATCGTGCTCTCTTGGTTTCCCTTCTACTTTGAGCTGAAGATCGCCTTTGTGATAT GGCTGCTGTCCCCTTACACCAAAGGCTCCAGCGTGCTCTACCGCAAGTTCGTGCACCCGA CACTGTCCAACAAGGAGAAGGAAATCGACGAGTACATCACTCAGGCCCGAGACAAGAGCT ACGAGACCATGATGAGGGTGGGCAAGAGGGGTATGAACCTGGCCGCCAATGCCGCAGTCA CGGCTGCTGCCAAGGGCCAGGGGGTGCTGTCAGAGAAGCTGCGAAGCTTCAGCATGCAGG ACCTGACCCTGATCCGGGACGAGGACGCGCTGCCCCTGCAGGGGCCCAACGGCCGCCTCA GACCCGGCCCTGGCGGCCTCCTGGACACCATTGAGGACTTAGGAGATGACCCTGCCCTGA GTTTAAGGTCAGGCCCAAACCAGCCAGATCACCGGACAGAGATCTCCGAGGATGACACGG GAGACAAGGCTCCTAAGAAGGCCAAACCCATCAAAAAAGTGCCCAAAGCTGAGCCACTGG CCTCCAAGACACTGAAGACCCGGCCCAAGAAGAAGACGTCCGCCGGGGGCGACTCAGCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCCGCCGCTGGGCCTCCGGCAGCTACATCCTTGGCCGGGGCCGGGTCCGCGCCCCGCG CCCCGCGCGGCCCCGCCATGGTGTCCTGGATCATCTCTCGCCTGGTGGTGCTCATCTTTG GCACCCTGTACCCCGCCTATTCTTCCTACAAGGCCGTGAAGACGAAAAACGTGAAGGAAT ATGTGAAGTGGATGATGTACTGGATCGTCTTTGCCTTCTTCACCACGGCTGAGACCCTCA CAGATATCGTGCTCTCTTGGTTTCCCTTCTACTTTGAGCTGAAGATCGCCTTTGTGATAT GGCTGCTGTCCCCTTACACCAAAGGCTCCAGCGTGCTCTACCGCAAGTTCGTGCACCCGA CACTGTCCAACAAGGAGAAGGAAATCGACGAGTACATCACTCAGGCCCGAGACAAGAGCT ACGAGACCATGATGAGGGTGGGCAAGAGGGGTATGAACCTGGCCGCCAATGCCGCAGTCA CGGCTGCTGCCAAGGGCCAGGGGGTGCTGTCAGAGAAGCTGCGAAGCTTCAGCATGCAGG ACCTGACCCTGATCCGGGACGAGGACGCGCTGCCCCTGCAGGGGCCCAACGGCCGCCTCA GACCCGGCCCTGGCGGCCTCCTGGACACCATTGAGGACTTAGGAGATGACCCTGCCCTGA GTTTAAGGTCAGGCCCAAACCAGCCAGATCACCGGACAGAGATCTCCGAGGATGACACGG GAGACAAGGCTCCTAAGAAGGCCAAACCCATCAAAAAAGTGCCCAAAGCTGAGCCACTGG CCTCCAAGACACTGAAGACCCGGCCCAAGAAGAAGACGTCCGCCGGGGGCGACTCAGCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 252-370, - strand, RNAz p=0.709186 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 252-370, - strand, RNAz p=0.709186 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-110, gnl|bosTau2|chr7 (34917831-34917947) | |
| 1-110, gnl|Hg17|chr5 (137802721-137802829) | |
| 252-385, gnl|bosTau2|chr11 (36469600-36469733) | |
| 252-385, gnl|canFam2|chr17 (41938696-41938568) | |
| 252-385, gnl|danRer3|chrNA (216242070-216241942) | |
| 252-385, gnl|dasNov1|scaffold_43349 (7111-6983) | |
| 252-385, gnl|echTel1|scaffold_323782 (47404-47532) | |
| 252-385, gnl|fr1|chrUn (69866182-69866310) | |
| 252-385, gnl|galGal2|chr4 (85613866-85613994) | |
| 252-385, gnl|hg17|chr2 (86393471-86393599) | |
| 252-385, gnl|Hg17|chr2 (86393603-86393470) | |
| 252-385, gnl|loxAfr1|scaffold_14699 (4180-4308) | |
| 252-385, gnl|mm7|chr6 (71791245-71791117) | |
| 252-385, gnl|Mm7|chr6 (71791111-71791244) | |
| 252-385, gnl|monDom2|scaffold_63 (502639-502767) | |
| 252-385, gnl|oryCun1|scaffold_92506 (1179-1307) | |
| 252-385, gnl|panTro1|chr12_random (30531040-30530912) | |
| 252-385, gnl|rheMac2|chr13 (86840490-86840618) | |
| 252-385, gnl|rn3|chr4 (105305829-105305701) | |
| 252-385, gnl|tetNig1|chr10 (5444753-5444625) | |
| 252-385, gnl|xenTro1|scaffold_149 (603248-603375) | |
| 490-643, gnl|bosTau2|chr7 (34922094-34922247) | |
| 490-643, gnl|Hg17|chr5 (137808811-137808964) | |
| 490-643, gnl|Mm7|chr18 (35222041-35222194) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-110, gnl|bosTau2|chr7 (34917831-34917947) | |
| 1-110, gnl|Hg17|chr5 (137802721-137802829) | |
| 252-385, gnl|bosTau2|chr11 (36469600-36469733) | |
| 252-385, gnl|canFam2|chr17 (41938696-41938568) | |
| 252-385, gnl|danRer3|chrNA (216242070-216241942) | |
| 252-385, gnl|dasNov1|scaffold_43349 (7111-6983) | |
| 252-385, gnl|echTel1|scaffold_323782 (47404-47532) | |
| 252-385, gnl|fr1|chrUn (69866182-69866310) | |
| 252-385, gnl|galGal2|chr4 (85613866-85613994) | |
| 252-385, gnl|hg17|chr2 (86393471-86393599) | |
| 252-385, gnl|Hg17|chr2 (86393603-86393470) | |
| 252-385, gnl|loxAfr1|scaffold_14699 (4180-4308) | |
| 252-385, gnl|mm7|chr6 (71791245-71791117) | |
| 252-385, gnl|Mm7|chr6 (71791111-71791244) | |
| 252-385, gnl|monDom2|scaffold_63 (502639-502767) | |
| 252-385, gnl|oryCun1|scaffold_92506 (1179-1307) | |
| 252-385, gnl|panTro1|chr12_random (30531040-30530912) | |
| 252-385, gnl|rheMac2|chr13 (86840490-86840618) | |
| 252-385, gnl|rn3|chr4 (105305829-105305701) | |
| 252-385, gnl|tetNig1|chr10 (5444753-5444625) | |
| 252-385, gnl|xenTro1|scaffold_149 (603248-603375) | |
| 490-643, gnl|bosTau2|chr7 (34922094-34922247) | |
| 490-643, gnl|Hg17|chr5 (137808811-137808964) | |
| 490-643, gnl|Mm7|chr18 (35222041-35222194) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |