Ss1.1-Pig3-SRG8022P03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAAGAGCGCGGGCCCGGGACAGAAGCTTACAGAGTCGGTCGGGGAGAAGGCCCCCAAGG AAAAGCCCAAGCAGCAGGCGCTCCGGCAGCCCCGCCAGGGACCTACTGATGAGGCTCAGA TGGCGGCCGCGGCGGCCCTGGCCCGGCTCGAGCAGAAGCAACCCAAGGCGCGGGGCCCCA CATCCCAGGATTCTATCCGGAACCAGGTGAGAAAGGAACTTCGAGCTGAAGCAACTGTCA GTGGGAACCAGGAGGCCGCAGGGACCAACACGGTGCCCGAGCCCAAAGAAGAAGGCTCAG CCCACCTAGCGGTGCCTGGAGTGTACTTCATCTGCCCGCTCACGGGGGCCATCCTGAGGA AGGACCAGCGGGATGCCCGCATCAGAGAGGCCATTCTCTCGCACTTTTCCACCGACCCAG TGGCTGCTTCTATCATGAAGATCCACACGTTCAACAAGGACCGTGACCGGGTGAAGCTGG GCGTGGACACCATTGCCAAGTACTTGGATAATATCCACCTGCATCCGGAGGAGGAGAAAT ACCGGAAGATCAAGCTGCAGAACAAGGTGTTCCAGGAGCGCATTAACTGCCTGGAAGGGA CCCACGAGTTTTTTGAGGCCATCGGCTTCCAGAAGGCACTGCTTCCAGTCCCTGACCAGG AGGGCCCTGAAGAGTTCTACGTGCTGAGCGAGGCGGCCTTGGCCCAGCTACAGAGTCTGG AACGGCACAAAGAGCAGCTGTTGCACGCCGAGCCTGTGCGGGCCACACTGGCCCGTCAGT GCCGGGTCTTCCGGCCCTCGCCCCTGGCCTCCCAGTTCGATCTGCCCATGGATTTCTTCA ACCTCACTGCCGAAGAGATAAAGCGGGAGCAGAGGCTGCGGTCTGAGGCCGTGGAGCGGC TGAGCGTGCTGCGGACCAAGGCCATGCGCGAGAGGGAGGAGCAGAGGGAGATGCGCAAGT ACACGTACACACTGCTGCGCGTGCGCTTCCCTGATGGCTGCCTGCTGCAGGGGACCTTCT ACGCCCGGGAGCGGGTGGCGGCACTGTACGGCTTTGTCCGTGAGGCCTTGCAGAATGACT GGCTACCTTTTGAGCTGCTGGCCTCAGGAGGGCAGAAGTTGTCAGAGGACGAGAACCTGG CCTTCAATGAGTGTGGGCTGGTACCCTCAGCCCTCCTGACCTTCTCATGGGACGCAGCTG TGCTAGAGGACATCAAGGCTGCAGGGGCCAAGCCAGACACATCTATCCTGAAACCTGAGC TCCTGTCGGCCATCGAGAAGCTCTAGTGAAATAAAAGCAGGGCTGGCTTCAGCTCCTGTG GGTCTGTGTTATGCTCTCCTGCTTTTTCCACATTCCCTCTGTCCCGGCCCCTCTGCCACT ACCAGGCCTCCCAGCTTCCTCTGGAGACATGGGGAGGATGCCAGCTGGCCCCAGACACAT GCTGTGACTGCCTCTGGGAGAGGGCAGCCACGACTAACCTGTTTCACAGAACCCCTGGGC ATGTCATCTGTGGGCACTCCCTGGGCAGGAGAATGGGCCTGCAGCTCCGGCCCCGTCCCC ATGTACTTGGCCCATGTGGCTGCAGCTGGCATGAGGGTGACACTGGGCCTGTCAAGGACA TAATTCTATAAAACTGTAAACTTGAATAAATAGGATGTTTGACTAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAAGAGCGCGGGCCCGGGACAGAAGCTTACAGAGTCGGTCGGGGAGAAGGCCCCCAAGG AAAAGCCCAAGCAGCAGGCGCTCCGGCAGCCCCGCCAGGGACCTACTGATGAGGCTCAGA TGGCGGCCGCGGCGGCCCTGGCCCGGCTCGAGCAGAAGCAACCCAAGGCGCGGGGCCCCA CATCCCAGGATTCTATCCGGAACCAGGTGAGAAAGGAACTTCGAGCTGAAGCAACTGTCA GTGGGAACCAGGAGGCCGCAGGGACCAACACGGTGCCCGAGCCCAAAGAAGAAGGCTCAG CCCACCTAGCGGTGCCTGGAGTGTACTTCATCTGCCCGCTCACGGGGGCCATCCTGAGGA AGGACCAGCGGGATGCCCGCATCAGAGAGGCCATTCTCTCGCACTTTTCCACCGACCCAG TGGCTGCTTCTATCATGAAGATCCACACGTTCAACAAGGACCGTGACCGGGTGAAGCTGG GCGTGGACACCATTGCCAAGTACTTGGATAATATCCACCTGCATCCGGAGGAGGAGAAAT ACCGGAAGATCAAGCTGCAGAACAAGGTGTTCCAGGAGCGCATTAACTGCCTGGAAGGGA CCCACGAGTTTTTTGAGGCCATCGGCTTCCAGAAGGCACTGCTTCCAGTCCCTGACCAGG AGGGCCCTGAAGAGTTCTACGTGCTGAGCGAGGCGGCCTTGGCCCAGCTACAGAGTCTGG AACGGCACAAAGAGCAGCTGTTGCACGCCGAGCCTGTGCGGGCCACACTGGCCCGTCAGT GCCGGGTCTTCCGGCCCTCGCCCCTGGCCTCCCAGTTCGATCTGCCCATGGATTTCTTCA ACCTCACTGCCGAAGAGATAAAGCGGGAGCAGAGGCTGCGGTCTGAGGCCGTGGAGCGGC TGAGCGTGCTGCGGACCAAGGCCATGCGCGAGAGGGAGGAGCAGAGGGAGATGCGCAAGT ACACGTACACACTGCTGCGCGTGCGCTTCCCTGATGGCTGCCTGCTGCAGGGGACCTTCT ACGCCCGGGAGCGGGTGGCGGCACTGTACGGCTTTGTCCGTGAGGCCTTGCAGAATGACT GGCTACCTTTTGAGCTGCTGGCCTCAGGAGGGCAGAAGTTGTCAGAGGACGAGAACCTGG CCTTCAATGAGTGTGGGCTGGTACCCTCAGCCCTCCTGACCTTCTCATGGGACGCAGCTG TGCTAGAGGACATCAAGGCTGCAGGGGCCAAGCCAGACACATCTATCCTGAAACCTGAGC TCCTGTCGGCCATCGAGAAGCTCTAGTGAAATAAAAGCAGGGCTGGCTTCAGCTCCTGTG GGTCTGTGTTATGCTCTCCTGCTTTTTCCACATTCCCTCTGTCCCGGCCCCTCTGCCACT ACCAGGCCTCCCAGCTTCCTCTGGAGACATGGGGAGGATGCCAGCTGGCCCCAGACACAT GCTGTGACTGCCTCTGGGAGAGGGCAGCCACGACTAACCTGTTTCACAGAACCCCTGGGC ATGTCATCTGTGGGCACTCCCTGGGCAGGAGAATGGGCCTGCAGCTCCGGCCCCGTCCCC ATGTACTTGGCCCATGTGGCTGCAGCTGGCATGAGGGTGACACTGGGCCTGTCAAGGACA TAATTCTATAAAACTGTAAACTTGAATAAATAGGATGTTTGACTAGTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 43-211, gnl|bosTau2|chr7 (15061211-15061380) | |
| 43-211, gnl|Hg17|chr19 (4405091-4404922) | |
| 43-211, gnl|Mm7|chr17 (54232643-54232474) | |
| 272-398, gnl|bosTau2|chr7 (15063006-15063132) | |
| 272-398, gnl|Hg17|chr19 (4403490-4403364) | |
| 272-398, gnl|Mm7|chr17 (54231936-54231810) | |
| 401-501, gnl|bosTau2|chr7 (15066295-15066395) | |
| 401-501, gnl|canFam2|chr20 (58189926-58189835) | |
| 401-501, gnl|danRer3|chr22 (18484988-18485077) | |
| 401-501, gnl|fr1|chrUn (199831464-199831551) | |
| 401-501, gnl|galGal2|chr28 (1422039-1422133) | |
| 401-501, gnl|hg17|chr19 (4399306-4399397) | |
| 401-501, gnl|Hg17|chr19 (4399413-4399313) | |
| 401-501, gnl|mm7|chr17 (54230288-54230376) | |
| 401-501, gnl|Mm7|chr17 (54230392-54230292) | |
| 401-501, gnl|monDom2|scaffold_85 (1352794-1352880) | |
| 401-501, gnl|oryCun1|scaffold_137495 (4276-4193) | |
| 401-501, gnl|panTro1|chr20 (4675062-4675153) | |
| 401-501, gnl|rheMac2|chr19 (4315902-4315993) | |
| 401-501, gnl|rn3|chrUn (25718567-25718479) | |
| 401-501, gnl|tetNig1|chr1_random (3073730-3073635) | |
| 401-501, gnl|xenTro1|scaffold_294 (1344564-1344650) | |
| 660-1034, gnl|bosTau2|chr7 (15068290-15068664) | |
| 660-1034, gnl|Hg17|chr19 (4397717-4397267) | |
| 660-1034, gnl|Mm7|chr17 (54229020-54228582) | |
| 1157-1668, gnl|bosTau2|chr7 (15069525-15070009) | |
| 1157-1668, gnl|Hg17|chr19 (4396624-4396000) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-211, gnl|bosTau2|chr7 (15061211-15061380) | |
| 43-211, gnl|Hg17|chr19 (4405091-4404922) | |
| 43-211, gnl|Mm7|chr17 (54232643-54232474) | |
| 272-398, gnl|bosTau2|chr7 (15063006-15063132) | |
| 272-398, gnl|Hg17|chr19 (4403490-4403364) | |
| 272-398, gnl|Mm7|chr17 (54231936-54231810) | |
| 401-501, gnl|bosTau2|chr7 (15066295-15066395) | |
| 401-501, gnl|canFam2|chr20 (58189926-58189835) | |
| 401-501, gnl|danRer3|chr22 (18484988-18485077) | |
| 401-501, gnl|fr1|chrUn (199831464-199831551) | |
| 401-501, gnl|galGal2|chr28 (1422039-1422133) | |
| 401-501, gnl|hg17|chr19 (4399306-4399397) | |
| 401-501, gnl|Hg17|chr19 (4399413-4399313) | |
| 401-501, gnl|mm7|chr17 (54230288-54230376) | |
| 401-501, gnl|Mm7|chr17 (54230392-54230292) | |
| 401-501, gnl|monDom2|scaffold_85 (1352794-1352880) | |
| 401-501, gnl|oryCun1|scaffold_137495 (4276-4193) | |
| 401-501, gnl|panTro1|chr20 (4675062-4675153) | |
| 401-501, gnl|rheMac2|chr19 (4315902-4315993) | |
| 401-501, gnl|rn3|chrUn (25718567-25718479) | |
| 401-501, gnl|tetNig1|chr1_random (3073730-3073635) | |
| 401-501, gnl|xenTro1|scaffold_294 (1344564-1344650) | |
| 660-1034, gnl|bosTau2|chr7 (15068290-15068664) | |
| 660-1034, gnl|Hg17|chr19 (4397717-4397267) | |
| 660-1034, gnl|Mm7|chr17 (54229020-54228582) | |
| 1157-1668, gnl|bosTau2|chr7 (15069525-15070009) | |
| 1157-1668, gnl|Hg17|chr19 (4396624-4396000) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| fce (0.814775) | |
| fbs (0.526039) | |
| cov (0.396458) | |
| hyp (0.285673) | |
| ute (0.265569) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| nep (0.183925) | |
| csp (0.161186) | |
| cli (0.152812) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.814775) | |
| fbs (0.526039) | |
| cov (0.396458) | |
| hyp (0.285673) | |
| ute (0.265569) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| nep (0.183925) | |
| csp (0.161186) | |
| cli (0.152812) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |