Ss1.1-Pig3-SRG8022P07.3
|
AGTCGAGAGCGGTCCAGCAACTGGGTCTCCTCTCAGCCCTCGAGTGGCCATGTCCCAACC
CAGTGCCCCGCCTCCATATGAGGACCGCAACCCTCTGTACCCTGGCCCTCCGCCCCCAGG
GGGCTATGGGCAGCCTACTGTCCTGCCTGGCGGGTACCCTGCCTACCCACAGCCTGGCTA
TGGTCACCCTGCTGGCTACCCACAGCCTATGCCCCCCATCCACCCGCCCATGAGCTATGG
CCCAGGCCATGGCTATGGTGGGGAGGAGAGAGCGGTGAGTGACAACTTCGGGTCTGGAGA
GTGGAGTGACAGGAAAGTCCGACATGCCTTCATCCGAAAGGTTTACGCCATCATCTCGGT
CCAGCTGCTCATCACGGTGGCCATCATCGCTATCTTCACCTTCGTGAAGCCGGTCAGCAA
TTTCGTGAGGGCAAACCTGGCTGTCTACTACGCATCCTATGCTGTCTTCCTGGCCACCTA
CCTGACCCTCATCTGCTGCCAGGGACCCAGACGCCGCTTCCCATGGAACATCATCCTGCT
GACCCTCTTTACTCTGGCCATGGGCTTCATGACCGGCACCATCTCCAGCGTGTATGACAC
CAAGGCCGTCATCCTCGCGATGATCATCACTGCCGTGGTGTCCATTTCAGTCACCATCTT
CTGCTTCCAGACCAAGGTGGACTTCACCTCCTGCACAGGTCTCTTCTGTGTCCTGGGAAT
TGTGATGATGGTGACTGGGATTGTCACTGCCATTGTGCTGTCCTTCAAATATATTTACTG
GCTGCACATGGTCTATGCTGCCCTGGGTGCCATTTGCTTCACTTTGTTCCTGGCTTACGA
CACGCAGCTGGTCCTGGGGAACCGGAAGCACACCATCAGCCCCGAGGACTACATCACCGG
CGCCCTGCAGATCTACACCGACATCGTCTACATCTTCACCTTTGTGCTGCAGCTCCTGGG
GAGCCGGAATTAAGGAGCGCCTCCTGTTGTGCCCCCTGCCCCGGGCCTTCCCTGCCACAG
AGAGCTGGACCTGGGGCTGGGGCTGGCCCTCAGACTTCTTTCCTTCCTCTCAAGTAATAG
CCCATTTCCCTTTCTCTCCAGGGATGGGTCGCCTCTCTGGCTATGGATGCGTAGGTACCT
GGTGGGGTTGTAGGAACTGGGGACTCACCCCTGCTCTTGGTGGACTCACAGGGACTGGGC
CAAAGGTGTGCCTTCTTCCTCTGCCCACCAAATCCTTAACAGCTGGGGTTCGAGTGGGGA
GGGATGAAAAGAGCTAAAATGGAATATGAGAGGCAGAAGTGACTTTGTGGTGACGAGGTT
TCCCCTCCCACTTCTGCCACTGGCTGGAGCTGTTTCCTCCCTCAAACCCTAACAAAGCCA
GACAGTGCTGTCCCCAGCCCCCTGGACTCACAGCCAGCCACTACCCTGTACTCCTTTGGT
AGCCCTTGGCCTTCCCGCTCAGGAAGGTAGACAGGGTTTGTGCCTATGGGTCTCCCCTGC
TTCACCCCTTCTCTCAATAGCATATATATATATGTGTATATATATACTGATTTTCTGGGC
TAGGGTCGGGGAGGGAGAGGAGAGTGAGCCAAGTCAGGTGCGGAGGTCAATACGAGATTA
GCATCTGCCCGGGGCGTCCCTCTGGCTTGTGGTGGTGGAGAGCAGGCCCGCCTGCAGCCA
TCTGGTCCCCATTCTCCAAAGGTGCCTGGGGCCCCCCTGGTGCTTCTGGCTGCTCAGAGC
AGAAAGTGAGGGACAAAGGTCAGGTGGTGTGTAGGGTCACTGCTTCCTGACAGCGTGGCC
AGGAAGTAACCAGGGTGAAGAGAGACTGGGGTCCCCTACCCTGTCTGAGAGCCATGGAAA
CCTATGGTGGCACCCATGGTTCTTGCGTTCTGCGAACTCGGGGAGGGCCCTGAGAGGAAC
GAGATGCCCCTCGCTTGCGGGATGTAAGACTTCGGCCCCATCTCTCCAGCCAACTACCGT
TTTCTTCTTGACACCAAGTGCCTCAAGCTGGAATGGGGGAGGGGGGACAAGGGCCACTCT
GTGGGGGTGGGGGTGGAAACCAGATCAGCCCAAGGGTATAGTTAGGACTTCTTTATTAAG
TACTTGGTCCTACCTATATCCCACAAAAGGACATAACTAGAAATGTAATAAAGTTTTATG
TTTAGAAGGCAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTCGAGAGCGGTCCAGCAACTGGGTCTCCTCTCAGCCCTCGAGTGGCCATGTCCCAACC
CAGTGCCCCGCCTCCATATGAGGACCGCAACCCTCTGTACCCTGGCCCTCCGCCCCCAGG
GGGCTATGGGCAGCCTACTGTCCTGCCTGGCGGGTACCCTGCCTACCCACAGCCTGGCTA
TGGTCACCCTGCTGGCTACCCACAGCCTATGCCCCCCATCCACCCGCCCATGAGCTATGG
CCCAGGCCATGGCTATGGTGGGGAGGAGAGAGCGGTGAGTGACAACTTCGGGTCTGGAGA
GTGGAGTGACAGGAAAGTCCGACATGCCTTCATCCGAAAGGTTTACGCCATCATCTCGGT
CCAGCTGCTCATCACGGTGGCCATCATCGCTATCTTCACCTTCGTGAAGCCGGTCAGCAA
TTTCGTGAGGGCAAACCTGGCTGTCTACTACGCATCCTATGCTGTCTTCCTGGCCACCTA
CCTGACCCTCATCTGCTGCCAGGGACCCAGACGCCGCTTCCCATGGAACATCATCCTGCT
GACCCTCTTTACTCTGGCCATGGGCTTCATGACCGGCACCATCTCCAGCGTGTATGACAC
CAAGGCCGTCATCCTCGCGATGATCATCACTGCCGTGGTGTCCATTTCAGTCACCATCTT
CTGCTTCCAGACCAAGGTGGACTTCACCTCCTGCACAGGTCTCTTCTGTGTCCTGGGAAT
TGTGATGATGGTGACTGGGATTGTCACTGCCATTGTGCTGTCCTTCAAATATATTTACTG
GCTGCACATGGTCTATGCTGCCCTGGGTGCCATTTGCTTCACTTTGTTCCTGGCTTACGA
CACGCAGCTGGTCCTGGGGAACCGGAAGCACACCATCAGCCCCGAGGACTACATCACCGG
CGCCCTGCAGATCTACACCGACATCGTCTACATCTTCACCTTTGTGCTGCAGCTCCTGGG
GAGCCGGAATTAAGGAGCGCCTCCTGTTGTGCCCCCTGCCCCGGGCCTTCCCTGCCACAG
AGAGCTGGACCTGGGGCTGGGGCTGGCCCTCAGACTTCTTTCCTTCCTCTCAAGTAATAG
CCCATTTCCCTTTCTCTCCAGGGATGGGTCGCCTCTCTGGCTATGGATGCGTAGGTACCT
GGTGGGGTTGTAGGAACTGGGGACTCACCCCTGCTCTTGGTGGACTCACAGGGACTGGGC
CAAAGGTGTGCCTTCTTCCTCTGCCCACCAAATCCTTAACAGCTGGGGTTCGAGTGGGGA
GGGATGAAAAGAGCTAAAATGGAATATGAGAGGCAGAAGTGACTTTGTGGTGACGAGGTT
TCCCCTCCCACTTCTGCCACTGGCTGGAGCTGTTTCCTCCCTCAAACCCTAACAAAGCCA
GACAGTGCTGTCCCCAGCCCCCTGGACTCACAGCCAGCCACTACCCTGTACTCCTTTGGT
AGCCCTTGGCCTTCCCGCTCAGGAAGGTAGACAGGGTTTGTGCCTATGGGTCTCCCCTGC
TTCACCCCTTCTCTCAATAGCATATATATATATGTGTATATATATACTGATTTTCTGGGC
TAGGGTCGGGGAGGGAGAGGAGAGTGAGCCAAGTCAGGTGCGGAGGTCAATACGAGATTA
GCATCTGCCCGGGGCGTCCCTCTGGCTTGTGGTGGTGGAGAGCAGGCCCGCCTGCAGCCA
TCTGGTCCCCATTCTCCAAAGGTGCCTGGGGCCCCCCTGGTGCTTCTGGCTGCTCAGAGC
AGAAAGTGAGGGACAAAGGTCAGGTGGTGTGTAGGGTCACTGCTTCCTGACAGCGTGGCC
AGGAAGTAACCAGGGTGAAGAGAGACTGGGGTCCCCTACCCTGTCTGAGAGCCATGGAAA
CCTATGGTGGCACCCATGGTTCTTGCGTTCTGCGAACTCGGGGAGGGCCCTGAGAGGAAC
GAGATGCCCCTCGCTTGCGGGATGTAAGACTTCGGCCCCATCTCTCCAGCCAACTACCGT
TTTCTTCTTGACACCAAGTGCCTCAAGCTGGAATGGGGGAGGGGGGACAAGGGCCACTCT
GTGGGGGTGGGGGTGGAAACCAGATCAGCCCAAGGGTATAGTTAGGACTTCTTTATTAAG
TACTTGGTCCTACCTATATCCCACAAAAGGACATAACTAGAAATGTAATAAAGTTTTATG
TTTAGAAGGCAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
11-240, gnl|bosTau2|chr2 (64641971-64641737) |
|
11-240, gnl|dasNov1|scaffold_12456 (657-483) |
|
11-240, gnl|echTel1|scaffold_295751 (166-4) |
|
11-240, gnl|fr1|chrUn (68095649-68095457) |
|
11-240, gnl|hg17|chr2 (218972158-218972332) |
|
11-240, gnl|Hg17|chr2 (218972410-218972167) |
|
11-240, gnl|loxAfr1|scaffold_3475 (46264-46091) |
|
11-240, gnl|mm7|chr1 (74534865-74535035) |
|
11-240, gnl|Mm7|chr1 (74535113-74534870) |
|
11-240, gnl|monDom2|scaffold_39 (2378962-2378818) |
|
11-240, gnl|panTro1|chr13 (109129373-109129547) |
|
11-240, gnl|rheMac2|chr12 (82102921-82103095) |
|
11-240, gnl|rn3|chr9 (73770202-73770372) |
|
11-240, gnl|xenTro1|scaffold_31 (1444810-1445043) |
| |
|
826-1728, gnl|bosTau2|chr2 (64634716-64633843) |
|
826-1728, gnl|Hg17|chr2 (218965850-218964928) |
|
826-1728, gnl|Mm7|chr1 (74529192-74528345) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
11-240, gnl|bosTau2|chr2 (64641971-64641737) |
|
11-240, gnl|dasNov1|scaffold_12456 (657-483) |
|
11-240, gnl|echTel1|scaffold_295751 (166-4) |
|
11-240, gnl|fr1|chrUn (68095649-68095457) |
|
11-240, gnl|hg17|chr2 (218972158-218972332) |
|
11-240, gnl|Hg17|chr2 (218972410-218972167) |
|
11-240, gnl|loxAfr1|scaffold_3475 (46264-46091) |
|
11-240, gnl|mm7|chr1 (74534865-74535035) |
|
11-240, gnl|Mm7|chr1 (74535113-74534870) |
|
11-240, gnl|monDom2|scaffold_39 (2378962-2378818) |
|
11-240, gnl|panTro1|chr13 (109129373-109129547) |
|
11-240, gnl|rheMac2|chr12 (82102921-82103095) |
|
11-240, gnl|rn3|chr9 (73770202-73770372) |
|
11-240, gnl|xenTro1|scaffold_31 (1444810-1445043) |
| |
|
826-1728, gnl|bosTau2|chr2 (64634716-64633843) |
|
826-1728, gnl|Hg17|chr2 (218965850-218964928) |
|
826-1728, gnl|Mm7|chr1 (74529192-74528345) |
|
ton (0.877501) |
|
nlu (0.575043) |
|
cli (0.458435) |
|
hyp (0.42851) |
|
mas (0.42061) |
|
cki (0.330469) |
|
eli (0.303628) |
|
pla (0.267344) |
|
cov (0.264306) |
|
clu (0.239292) |
|
med (0.232504) |
|
jca (0.22792) |
|
cty (0.20816) |
|
col (0.195008) |
|
sto (0.179824) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
cag (0.151194) |
|
csk (0.140746) |
|
che (0.136314) |
|
ute (0.132784) |
|
ese (0.126502) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
cbl (0.114797) |
|
jej (0.0989218) |
|
ton (0.877501) |
|
nlu (0.575043) |
|
cli (0.458435) |
|
hyp (0.42851) |
|
mas (0.42061) |
|
cki (0.330469) |
|
eli (0.303628) |
|
pla (0.267344) |
|
cov (0.264306) |
|
clu (0.239292) |
|
med (0.232504) |
|
jca (0.22792) |
|
cty (0.20816) |
|
col (0.195008) |
|
sto (0.179824) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
cag (0.151194) |
|
csk (0.140746) |
|
che (0.136314) |
|
ute (0.132784) |
|
ese (0.126502) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
cbl (0.114797) |
|
jej (0.0989218) |
