Non-Coding RNA Search

Ss1.1-Pig3-SRG8022P09.3

Sequence:


               
               TGTATTCGAGACCAGCATACTTGGAAAGGATTTACCTTTCTCCACAGTGGACTGTTACAT
ACAAGGTGATGGTAATGATAAAAGTGTATAAATGATGTTCCCACCAGAAACCTGCCCTGT
CCTTCCCCTCTCTTCATTTCCCTTAACTCCCTCCCCAAACTACATTGAGCTGAGAAGCTT
TTCACCAGACTGTGATTTAGTGGTGGCTTAGACCTATTTATATTTGTATTAATTGCTTAC
AGATGATACCTCATATTAGCAATTACATTACACTACAGGAAATATGTAGGCATAGGCTCT
AGCTTATCTTGGCTTTGTGAAATTGTTCTAACTACTTGGAAAACAGTCTTTAAAATAATT
TGACTCTTCCTGTTAGTAATCTTTTCATCTAATCATCTAGGCAGCATTTAAATAGATTTG
AAAAATATTGTAGTATTTATTTTACTTCCCTTCCCCACAAAGTTTATGTTTGAATTATAT
GCACATGTGAGATTTTTTGCAATAATTCACAGCTTCCAAAGGTGGTATTGTATGCTCATA
CATTTTTTGGACTTTGTTATAATTCAGTGTCTTAAGGATTTAACCTCAGATTTTACAATC
TTATCTACCGAGACTGCAATTTTTAAAAAGCACTGGAGGTCTTATTGTTAAACTGGTTGT
AATGAGGCACTAAGGGTAAAAAAAATTGTACGTGTAGTGAAAAAAATATTTAAATCCATC
TTTTGAACAGAGTTTAACATAAGGAACTTATTTTTCATTTAAATGGGTTATTTTGAAATG
AAGATTAACATTTAGTCATCTTGATTTTTTTATCCAAATTGGAGGAAAAATTTATACCAT
ATTATGAGACAAGTGTGTACAGCAAAATGTGGGCAGTGGTAGCATCCTAAGAGTTTGTAT
ATATATTTATGCCTTCCCAGTCCTGCCAGTATATTTGACTTTGAACAGTGCTATCCCCAC
AGCCAATCATTACGTTACCCCAGCCCACAACTATCTTTTCTATCTTTTATGTTCACAGTG
AAAGGAATGTTGACTTTGAAATTATGCATTTATATTAATGTCACTGAACCAATGGGAATA
GTAATTTTTACACAAACTTGCTAAATATTGAGAGACTAAACTACTAAGTTAATAAATTAT
ATATAGCAATATAGCTATTCTTTCTAGACCATGTCTCACAATGAATTTCTGTTGCTTGAC
TATTTTCTTAGTGAACATTTGAACTAAGGCAGTGGCTGGGATTGGTGATCTGGCTAGTAA
GTATTTTGAAACATACTTTGAATAATATGACTTGGTGTTGATGGGGAAATAAAATATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTATTCGAGACCAGCATACTTGGAAAGGATTTACCTTTCTCCACAGTGGACTGTTACAT
ACAAGGTGATGGTAATGATAAAAGTGTATAAATGATGTTCCCACCAGAAACCTGCCCTGT
CCTTCCCCTCTCTTCATTTCCCTTAACTCCCTCCCCAAACTACATTGAGCTGAGAAGCTT
TTCACCAGACTGTGATTTAGTGGTGGCTTAGACCTATTTATATTTGTATTAATTGCTTAC
AGATGATACCTCATATTAGCAATTACATTACACTACAGGAAATATGTAGGCATAGGCTCT
AGCTTATCTTGGCTTTGTGAAATTGTTCTAACTACTTGGAAAACAGTCTTTAAAATAATT
TGACTCTTCCTGTTAGTAATCTTTTCATCTAATCATCTAGGCAGCATTTAAATAGATTTG
AAAAATATTGTAGTATTTATTTTACTTCCCTTCCCCACAAAGTTTATGTTTGAATTATAT
GCACATGTGAGATTTTTTGCAATAATTCACAGCTTCCAAAGGTGGTATTGTATGCTCATA
CATTTTTTGGACTTTGTTATAATTCAGTGTCTTAAGGATTTAACCTCAGATTTTACAATC
TTATCTACCGAGACTGCAATTTTTAAAAAGCACTGGAGGTCTTATTGTTAAACTGGTTGT
AATGAGGCACTAAGGGTAAAAAAAATTGTACGTGTAGTGAAAAAAATATTTAAATCCATC
TTTTGAACAGAGTTTAACATAAGGAACTTATTTTTCATTTAAATGGGTTATTTTGAAATG
AAGATTAACATTTAGTCATCTTGATTTTTTTATCCAAATTGGAGGAAAAATTTATACCAT
ATTATGAGACAAGTGTGTACAGCAAAATGTGGGCAGTGGTAGCATCCTAAGAGTTTGTAT
ATATATTTATGCCTTCCCAGTCCTGCCAGTATATTTGACTTTGAACAGTGCTATCCCCAC
AGCCAATCATTACGTTACCCCAGCCCACAACTATCTTTTCTATCTTTTATGTTCACAGTG
AAAGGAATGTTGACTTTGAAATTATGCATTTATATTAATGTCACTGAACCAATGGGAATA
GTAATTTTTACACAAACTTGCTAAATATTGAGAGACTAAACTACTAAGTTAATAAATTAT
ATATAGCAATATAGCTATTCTTTCTAGACCATGTCTCACAATGAATTTCTGTTGCTTGAC
TATTTTCTTAGTGAACATTTGAACTAAGGCAGTGGCTGGGATTGGTGATCTGGCTAGTAA
GTATTTTGAAACATACTTTGAATAATATGACTTGGTGTTGATGGGGAAATAAAATATGAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               494-1315, gnl|bosTau2|chr17 (24943230-24944033)
               

               
               494-1315, gnl|Hg17|chr11 (86208760-86208077)
               

               
               494-1315, gnl|Mm7|chr1 (55401436-55402142)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               494-1315, gnl|bosTau2|chr17 (24943230-24944033)
               

               
               494-1315, gnl|Hg17|chr11 (86208760-86208077)
               

               
               494-1315, gnl|Mm7|chr1 (55401436-55402142)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	494-1315, gnl\|bosTau2\|chr17 (24943230-24944033)
	494-1315, gnl\|Hg17\|chr11 (86208760-86208077)
	494-1315, gnl\|Mm7\|chr1 (55401436-55402142)

	mgm (0.180343)
	fbs (0.175346)
	eye (0.170503)
	liv (0.146284)
	ssp (0.13552)
	eje (0.0988338)
	ldo (0.0970026)