Non-Coding RNA Search

Ss1.1-Pig3-SRG8023A15.3

Sequence:


               
               CATTGGGGTGGGCTCCTTCCTATGTGACTGGATCCTGGTAACATTCATGAACAAAAACAA
GGTCTACAGCCATAAGAAATTTGACAAGATGGTGGATGCTCCTGGCGGGGGTGCAGGACC
AGGGCTCTGCGCCTCTGAGCCTTCCCAACAGGACTGCACACTCACAGACGCCCGAGGTCT
GGCCCAGCTNTGAGCCCCCTCCTGCCTTCTATCACGTGGCACCAGAGACCTGGGCCTATC
GGAGCCCCTGAAGTTTTTGGTCCCAAGACAGTCCCCAGGAGCATGGCTGGGACCTTAGAC
CTGGGCCCTGCCCATACACCTTGGCAAAACCAGCAGCCAAAGGACCCCTGTGCAACCAGG
CAGTGGCGTGACCTGAAGTGGGGGGCCCCTGCTCCCGCCTGCCCTCTATCTTTTCTCCCA
ACTGCCCAGGGGCCTAGAGGGGGCAAGTTCCACCTCTACCTTCTCCCCAGCTGCTCCCCA
CCCTCCAATCCTTTGCTCACCTCATAGCCAAGAAATCACATACTGAGTCCAATAAACCTG
TGACCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTGGGGTGGGCTCCTTCCTATGTGACTGGATCCTGGTAACATTCATGAACAAAAACAA
GGTCTACAGCCATAAGAAATTTGACAAGATGGTGGATGCTCCTGGCGGGGGTGCAGGACC
AGGGCTCTGCGCCTCTGAGCCTTCCCAACAGGACTGCACACTCACAGACGCCCGAGGTCT
GGCCCAGCTNTGAGCCCCCTCCTGCCTTCTATCACGTGGCACCAGAGACCTGGGCCTATC
GGAGCCCCTGAAGTTTTTGGTCCCAAGACAGTCCCCAGGAGCATGGCTGGGACCTTAGAC
CTGGGCCCTGCCCATACACCTTGGCAAAACCAGCAGCCAAAGGACCCCTGTGCAACCAGG
CAGTGGCGTGACCTGAAGTGGGGGGCCCCTGCTCCCGCCTGCCCTCTATCTTTTCTCCCA
ACTGCCCAGGGGCCTAGAGGGGGCAAGTTCCACCTCTACCTTCTCCCCAGCTGCTCCCCA
CCCTCCAATCCTTTGCTCACCTCATAGCCAAGAAATCACATACTGAGTCCAATAAACCTG
TGACCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61843351|ref|XP_605891.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843351|ref|XP_605891.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-345, - strand, RNAz p=0.985601

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-345, - strand, RNAz p=0.985601

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               79-549, gnl|bosTau2|chr17 (23046853-23047334)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-549, gnl|bosTau2|chr17 (23046853-23047334)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)