Non-Coding RNA Search

Ss1.1-Pig3-SRG8023B08.3

Sequence:


               
               CATGTTTGTGGAAGAATGTAGCAGAAGTATTTAGTATAATCTGAGTGAATATCTCCAATT
AGGAATTCTAGGCTCCATTTAAACTGAGTCACACTGCATAGGAATTAGAACCAAATTTAC
AGGTTATCAAAATCTTGGCCACCATTGCACAATTTTGTCCTAAAATATATTGAAACTTTG
TGAGGCATGTTAAGTTGCAGTTTGCACAAGTTCATCTCATTTGTATTCCAGTAATTTTTT
TTCTTCTACCCATGTTTTTCTAAATATGTACACATTTAGGGGTTTTTTTGATAGGCAGTA
AAAACTGTCTGCCATTTCCATTTGTCAAAAAGTAATAATTTCTTGATGACTGATTACATA
TTAATGATTTTTAATAACCCATTAGTTACTTTAAAGCTCAATTTATATTTATTCACTTTG
GTGTTAATATTGGGTAGCATGAAATCTGCATTGAGAAACTGAACAGCATACAACTTGGTA
GCTGTAAATTCCTTCAGAAAATGAAATTTCTTTAAAGATACATTCACATCAGTTCTTAAA
GAATAGTCGTAACTAGATTAATACTTGTTTTAGTTTAATAGTTTTAAGTGCCTGTTTGAG
ATGATAATAGGCAATTTTAGATGAATTTAGGGAAAAATTATTACCTGCAGAAATGTCAGT
TACAGAAGGTCCCCTTCCCTATAGCGTTAAATGGGTTATGTAATGTTTTATCCAAAAGTT
TCCAATTCCACTGTCTTGTGTTTTCATGTTGAAAATACTTTTGCATTTTTCCTTTGAGTG
CCAATTTCTTACTAGTACTATTTCTTAATGTAACATGTTTACCTGGAATGTATTTTAACT
ATTTTTGTATAGTGTAAACTGAAACATGCACATTTTGTACATTGTGCTTTTTTTCCGTGG
GACAAATGCAGTGTGATCCAGTTGTTTTCCATCATTTGGTTGCGCTGACCTAGGAATGTT
GGTCATATCAAACATTAAATTTAAAAATGACCACTCTTTTAATTAAAATTAACTTTTAAA
TGTTTATAGGAGTACGTGCTGTGAAGTGATCTGAAATTTGTAATATTTTTGTCATGAACT
GTACTGCTCCTAATTATTGTAATGTAATAAAAATAGTTATGGTGACTAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGTTTGTGGAAGAATGTAGCAGAAGTATTTAGTATAATCTGAGTGAATATCTCCAATT
AGGAATTCTAGGCTCCATTTAAACTGAGTCACACTGCATAGGAATTAGAACCAAATTTAC
AGGTTATCAAAATCTTGGCCACCATTGCACAATTTTGTCCTAAAATATATTGAAACTTTG
TGAGGCATGTTAAGTTGCAGTTTGCACAAGTTCATCTCATTTGTATTCCAGTAATTTTTT
TTCTTCTACCCATGTTTTTCTAAATATGTACACATTTAGGGGTTTTTTTGATAGGCAGTA
AAAACTGTCTGCCATTTCCATTTGTCAAAAAGTAATAATTTCTTGATGACTGATTACATA
TTAATGATTTTTAATAACCCATTAGTTACTTTAAAGCTCAATTTATATTTATTCACTTTG
GTGTTAATATTGGGTAGCATGAAATCTGCATTGAGAAACTGAACAGCATACAACTTGGTA
GCTGTAAATTCCTTCAGAAAATGAAATTTCTTTAAAGATACATTCACATCAGTTCTTAAA
GAATAGTCGTAACTAGATTAATACTTGTTTTAGTTTAATAGTTTTAAGTGCCTGTTTGAG
ATGATAATAGGCAATTTTAGATGAATTTAGGGAAAAATTATTACCTGCAGAAATGTCAGT
TACAGAAGGTCCCCTTCCCTATAGCGTTAAATGGGTTATGTAATGTTTTATCCAAAAGTT
TCCAATTCCACTGTCTTGTGTTTTCATGTTGAAAATACTTTTGCATTTTTCCTTTGAGTG
CCAATTTCTTACTAGTACTATTTCTTAATGTAACATGTTTACCTGGAATGTATTTTAACT
ATTTTTGTATAGTGTAAACTGAAACATGCACATTTTGTACATTGTGCTTTTTTTCCGTGG
GACAAATGCAGTGTGATCCAGTTGTTTTCCATCATTTGGTTGCGCTGACCTAGGAATGTT
GGTCATATCAAACATTAAATTTAAAAATGACCACTCTTTTAATTAAAATTAACTTTTAAA
TGTTTATAGGAGTACGTGCTGTGAAGTGATCTGAAATTTGTAATATTTTTGTCATGAACT
GTACTGCTCCTAATTATTGTAATGTAATAAAAATAGTTATGGTGACTAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               717-896, + strand, RNAz p=0.85904
               

               
               985-1128, - strand, RNAz p=0.992874

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               717-896, + strand, RNAz p=0.85904
               

               
               985-1128, - strand, RNAz p=0.992874

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1110-1203, + strand, RNAmicro p=0.952382

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1110-1203, + strand, RNAmicro p=0.952382

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC010502, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC010502, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1128, gnl|bosTau2|chr5 (51706847-51707966)
               

               
               4-1128, gnl|Hg17|chr12 (25250557-25249445)
               

               
               4-1128, gnl|Mm7|chr6 (145308727-145307565)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1128, gnl|bosTau2|chr5 (51706847-51707966)
               

               
               4-1128, gnl|Hg17|chr12 (25250557-25249445)
               

               
               4-1128, gnl|Mm7|chr6 (145308727-145307565)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               tra (0.369276)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

	717-896, + strand, RNAz p=0.85904
	985-1128, - strand, RNAz p=0.992874

	4-1128, gnl\|bosTau2\|chr5 (51706847-51707966)
	4-1128, gnl\|Hg17\|chr12 (25250557-25249445)
	4-1128, gnl\|Mm7\|chr6 (145308727-145307565)

	tra (0.369276)
	fce (0.271592)
	cbe (0.239234)
	fcc (0.197785)
	fbs (0.175346)
	rec (0.17307)
	liv (0.146284)
	lnt (0.142308)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	jca (0.11396)