Non-Coding RNA Search

Ss1.1-Pig3-SRG8023C16.3

Sequence:


               
               CACTCTTTTTTTATCCATTCAGAAAGCATTCTATAGTACTTTTCCTGAATGTACATTTCT
ATATTTTGTCCTTATCATGTCATGTTGGAAATAATTCATATGCACATCGCTTTTTTCTTA
TTTTTTCTTTTC------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------ACGAGGCCAGTCAGAGCCACAACAGGAACTTCCACA
TTGCTTTTTAAGAATCATTAATGTACTGTCTTCTCAACAAGGTCAGTGGAAATGGGATTT
TGGCAGCATCTGCCAAGAGTTAGACTGTGGTCATGACAAAGGATAGAGCATTGAGCAGTG
AATTTGTTTCATATTGCANGCAGTTATACAGATAGTAACTTCTAAAGGCAGCAAGTGAAG
GCTGAAAATGGTANGGATGTTGTAGTTTGTTGGCTTTTGTTCTTTTACTATCATTTTTGT
AGTTTGTTGTTTTAAATTAAGGTAAGTAGCATTTCGTGAAGGATGTCCATGTCCCAGAGA
GCCCAAGGCTGAAGTGTAGCTAATTTAGTGTAAATTAAGTATAGATTCCCAGTGAAGTCA
TTCTCCACTCAT------------------------------------------------
------------------------------------------------------------
------------------------------------------------GGTAAGGATGAA
AACTTTCCTTCACCTTGTCAGTCAAAGGACATGTTTTTCTTTTCATCAGTATTATTCTAA
GAGGTAGAATGTGTGAATGTTAAAAAAAACTAGGCATGGTCACAGCTCATTGTAGAACTG
GAATCTTATAATTTTTCTATAACTTCTGCTACTTTGGAATCATTTTTCTGTGTATGCATT
TTAGGAAAAACATGGAAAGATCATGACATGGAAGATCAGCACAAAAACCAGGGGAGAAAA
CTAAGGTGAGTGGCACTCACAGTAGAAAGCAGTGTCTCACATGAGAATTATATTATTGTA
CCAAATTTTAAAAAGAATCAAAACAACCCATGCTTCAAATTTATTGTTTCTCAGAAAAAA
TTCACCCAATTACTTTCTTATATATGACATAATGTTCAGTGTTTTCAAAATTGTTCACTT
GGAAACAATATCAATAAACCGTATATATATTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTCTTTTTTTATCCATTCAGAAAGCATTCTATAGTACTTTTCCTGAATGTACATTTCT
ATATTTTGTCCTTATCATGTCATGTTGGAAATAATTCATATGCACATCGCTTTTTTCTTA
TTTTTTCTTTTC------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------ACGAGGCCAGTCAGAGCCACAACAGGAACTTCCACA
TTGCTTTTTAAGAATCATTAATGTACTGTCTTCTCAACAAGGTCAGTGGAAATGGGATTT
TGGCAGCATCTGCCAAGAGTTAGACTGTGGTCATGACAAAGGATAGAGCATTGAGCAGTG
AATTTGTTTCATATTGCANGCAGTTATACAGATAGTAACTTCTAAAGGCAGCAAGTGAAG
GCTGAAAATGGTANGGATGTTGTAGTTTGTTGGCTTTTGTTCTTTTACTATCATTTTTGT
AGTTTGTTGTTTTAAATTAAGGTAAGTAGCATTTCGTGAAGGATGTCCATGTCCCAGAGA
GCCCAAGGCTGAAGTGTAGCTAATTTAGTGTAAATTAAGTATAGATTCCCAGTGAAGTCA
TTCTCCACTCAT------------------------------------------------
------------------------------------------------------------
------------------------------------------------GGTAAGGATGAA
AACTTTCCTTCACCTTGTCAGTCAAAGGACATGTTTTTCTTTTCATCAGTATTATTCTAA
GAGGTAGAATGTGTGAATGTTAAAAAAAACTAGGCATGGTCACAGCTCATTGTAGAACTG
GAATCTTATAATTTTTCTATAACTTCTGCTACTTTGGAATCATTTTTCTGTGTATGCATT
TTAGGAAAAACATGGAAAGATCATGACATGGAAGATCAGCACAAAAACCAGGGGAGAAAA
CTAAGGTGAGTGGCACTCACAGTAGAAAGCAGTGTCTCACATGAGAATTATATTATTGTA
CCAAATTTTAAAAAGAATCAAAACAACCCATGCTTCAAATTTATTGTTTCTCAGAAAAAA
TTCACCCAATTACTTTCTTATATATGACATAATGTTCAGTGTTTTCAAAATTGTTCACTT
GGAAACAATATCAATAAACCGTATATATATTAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               165-493, gnl|bosTau2|chr28 (9250004-9250324)
               

               
               165-493, gnl|Hg17|chr10 (38163307-38163001)
               


               
               541-998, gnl|bosTau2|chr7 (8240526-8240988)
               

               
               541-998, gnl|Hg17|chr19 (12555244-12554524)
               

               
               541-998, gnl|Mm7|chr17 (31024431-31024014)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-493, gnl|bosTau2|chr28 (9250004-9250324)
               

               
               165-493, gnl|Hg17|chr10 (38163307-38163001)
               


               
               541-998, gnl|bosTau2|chr7 (8240526-8240988)
               

               
               541-998, gnl|Hg17|chr19 (12555244-12554524)
               

               
               541-998, gnl|Mm7|chr17 (31024431-31024014)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	165-493, gnl\|bosTau2\|chr28 (9250004-9250324)
	165-493, gnl\|Hg17\|chr10 (38163307-38163001)

	541-998, gnl\|bosTau2\|chr7 (8240526-8240988)
	541-998, gnl\|Hg17\|chr19 (12555244-12554524)
	541-998, gnl\|Mm7\|chr17 (31024431-31024014)