Non-Coding RNA Search

Ss1.1-Pig3-SRG8023D18.3

Sequence:


               
               TTTTTTTTTTTTTTAAACCACAGAACTTGAATCCATGAAGGAACCAGAATTCACAAAGTC
TATGCAATCTTAGATAGGAGAGGGTTAGAGAGTCTGTCTTTACTGACGTTTTCAGAGACG
CTGGAAAAGTTTGTTCCAGATTGTGAGTGTTAATATCAGTACTACCAGCACTTTGCCAAA
ACTGAGTATGTCCAAGGGACCCCTGTTTCTAGAGTGAGTCTCAATTATATCAAAGGATAA
CTTCCAGTAATTCCCCAATATATCTGAGTGCTCTCTGCAAGCTGGGTGTCATTTCCAGCT
TTTGCCAGTCTGGCCCCAGCAGGGTACTATGTGTGAATGAATGCTGCTGTTTTGGAGTAT
GCTTGCTCCCCAGCCCCCACCCAGAACCCTGATCAGTTTGCTCTGACCCATAATGTTAGG
TGCAATGAGGACCCTATCAGAGCTCTTGGATGACTCTTAAAGATCTATGTGGCTTTTATG
TGAGGGGACGGAAGGCAGACACACCATGGCCCCTTATATCTTCCCTCTTGTTCTGCCACC
TAGTTCCAAATGGAACCAGCAAGTTGAGTGCATCCCTCTTGAGTGTTGTGTTGAGACAGG
CTGAAAAGAGGAGACTCTAGTTAACTATGTTGTGACATGTTGACAGACTCAAAGACACAA
CCACCTCAGCCTGGTCATGTGGCACGCCTGTGTATGTGTGTAACAGGATTCTGATTGTTA
GACTGTAATGTTTTCTTCTATGGGAAAAAAAAGTAATATAAAGAAAAATAAATAAAAATC
TATTTAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTAAACCACAGAACTTGAATCCATGAAGGAACCAGAATTCACAAAGTC
TATGCAATCTTAGATAGGAGAGGGTTAGAGAGTCTGTCTTTACTGACGTTTTCAGAGACG
CTGGAAAAGTTTGTTCCAGATTGTGAGTGTTAATATCAGTACTACCAGCACTTTGCCAAA
ACTGAGTATGTCCAAGGGACCCCTGTTTCTAGAGTGAGTCTCAATTATATCAAAGGATAA
CTTCCAGTAATTCCCCAATATATCTGAGTGCTCTCTGCAAGCTGGGTGTCATTTCCAGCT
TTTGCCAGTCTGGCCCCAGCAGGGTACTATGTGTGAATGAATGCTGCTGTTTTGGAGTAT
GCTTGCTCCCCAGCCCCCACCCAGAACCCTGATCAGTTTGCTCTGACCCATAATGTTAGG
TGCAATGAGGACCCTATCAGAGCTCTTGGATGACTCTTAAAGATCTATGTGGCTTTTATG
TGAGGGGACGGAAGGCAGACACACCATGGCCCCTTATATCTTCCCTCTTGTTCTGCCACC
TAGTTCCAAATGGAACCAGCAAGTTGAGTGCATCCCTCTTGAGTGTTGTGTTGAGACAGG
CTGAAAAGAGGAGACTCTAGTTAACTATGTTGTGACATGTTGACAGACTCAAAGACACAA
CCACCTCAGCCTGGTCATGTGGCACGCCTGTGTATGTGTGTAACAGGATTCTGATTGTTA
GACTGTAATGTTTTCTTCTATGGGAAAAAAAAGTAATATAAAGAAAAATAAATAAAAATC
TATTTAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               6-791, gnl|bosTau2|chr13 (46836358-46835574)
               

               
               6-791, gnl|Hg17|chr20 (32764121-32764899)
               

               
               6-791, gnl|Mm7|chr2 (155129946-155130703)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-791, gnl|bosTau2|chr13 (46836358-46835574)
               

               
               6-791, gnl|Hg17|chr20 (32764121-32764899)
               

               
               6-791, gnl|Mm7|chr2 (155129946-155130703)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               hyp (0.42851)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	6-791, gnl\|bosTau2\|chr13 (46836358-46835574)
	6-791, gnl\|Hg17\|chr20 (32764121-32764899)
	6-791, gnl\|Mm7\|chr2 (155129946-155130703)

	hyp (0.42851)
	lin (0.291206)
	ssp (0.271039)
	cov (0.264306)
	cbe (0.239234)
	tes (0.207814)
	col (0.195008)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	pty (0.142714)
	hlv (0.139256)
	bla (0.124347)
	ldo (0.0970026)