Ss1.1-Pig3-SRG8023D20.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CGGAGTCCCGTTCGCGGGAGGAGGCGGAGGGCGCAAAGCGAACCGGTGGATCTGTAAAGA AACCAACCTCCTAGGAGAGGGAGGGGAAAAGCCCAGCCGCCAGGTGTGTGCGCCCAAGAA CCATGTCTGCACGGGAGTCCTTTAACCCGGAAAGTTATGAATTGGACAAGAGCTTCCGGT TAACTAGATTCACTGAACTGAAGGGCACCGGCTGCAAAGTGCCTCAAGATGTCCTGCAGA AATTGCTGGAATCCTTACAGGAGAACCACTTCCAAGAAGATGAGCAATTTCTTGGAGCGG TTATGCCAAGGCTTGGCATCGGGATGGATACGTGTGTCATTCCTCTGAGGCATGGTGGTC TGTCCTTGGTTCAGACCACAGACTACATCTATCCCATCGTCGATGACCCTTACATGATGG GCAGGATAGCCTGTGCCAACGTCCTCAGTGACCTCTACGCCATGGGGGTCACAGAATGTG ACAATATGCTGATGCTCCTTGGAATCAGCAATAAAATGACTGACAGGGAAAGGGATAAAG TGATGCCCCTAATTATACAGGGTTTCAAAGACGCAGCAGAAGAGGCAGGAACATCTGTAA CGGGCGGCCAAACAGTGCTAAACCCCTGGATTGTTTTAGGAGGTGTGGCTACAACTGTCT GCCAGCCCAACGAATTTATCATGCCAGATAACGCAGTGCCAGGGGATGTGCTCGTGCTGA CAAAGCCCTTGGGGACGCAAGTGGCCGTGGCCGTGCACCAGTGGCTGGACATTCCTGAAA AATGGAATAAAATCAAGCTGGTGGTCACCCAGGAAGACGTGGAGCTGGCCTACCAGGAGG CAATGATGAACATGGCCAGGCTCAACAGGACAGCGGCGGGACTCATGCACACGTTCAATG CCCACGCGGCCACTGACATCACGGGCTTCGGGATCCTGGGCCACGCGCAGAACCTGGCCA AGCAGCAGAGGAACGAGGTGTCCTTCGTGATTCACAACCTTCCAGTCCTGGCCAAGATGG CAGCTGTGAGCAAGGCCTGCGGGAACATGTTCGGCCTCATGCACGGGACCTGCCCGGAGA CGTCAGGGGGCCTTCTAATCTGTTTACCGCGAGAGCAAGCCGCTCGGTTCTGCGCAGAGA TCAAGTCCCCCAAATATGGTGAAGGTCACCAAGCGTGGATTATTGGGATCGTGGAGAAGG GGAACCGCACAGCCAGGATCATAGACAAACCCCGGATCATCGAGGTCGCGCCACAGGTGG CCACCCAGAATGTGAACCCCACACCGGGCGCCACCTCTTAATCTCGGCCGGGTCCACGTG TGGTTTTGGTTTTAAATAGCTCTATTTCCTTTATCATTTCAATTAAAGACTATAAACAAC AACGAAAAAAATCTCATTGTGTCTACACATCTGGTGACCTTAGGTCGATTTGTGAGTGGA TGCAATTAATAAAATAAAATCCAT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CGGAGTCCCGTTCGCGGGAGGAGGCGGAGGGCGCAAAGCGAACCGGTGGATCTGTAAAGA AACCAACCTCCTAGGAGAGGGAGGGGAAAAGCCCAGCCGCCAGGTGTGTGCGCCCAAGAA CCATGTCTGCACGGGAGTCCTTTAACCCGGAAAGTTATGAATTGGACAAGAGCTTCCGGT TAACTAGATTCACTGAACTGAAGGGCACCGGCTGCAAAGTGCCTCAAGATGTCCTGCAGA AATTGCTGGAATCCTTACAGGAGAACCACTTCCAAGAAGATGAGCAATTTCTTGGAGCGG TTATGCCAAGGCTTGGCATCGGGATGGATACGTGTGTCATTCCTCTGAGGCATGGTGGTC TGTCCTTGGTTCAGACCACAGACTACATCTATCCCATCGTCGATGACCCTTACATGATGG GCAGGATAGCCTGTGCCAACGTCCTCAGTGACCTCTACGCCATGGGGGTCACAGAATGTG ACAATATGCTGATGCTCCTTGGAATCAGCAATAAAATGACTGACAGGGAAAGGGATAAAG TGATGCCCCTAATTATACAGGGTTTCAAAGACGCAGCAGAAGAGGCAGGAACATCTGTAA CGGGCGGCCAAACAGTGCTAAACCCCTGGATTGTTTTAGGAGGTGTGGCTACAACTGTCT GCCAGCCCAACGAATTTATCATGCCAGATAACGCAGTGCCAGGGGATGTGCTCGTGCTGA CAAAGCCCTTGGGGACGCAAGTGGCCGTGGCCGTGCACCAGTGGCTGGACATTCCTGAAA AATGGAATAAAATCAAGCTGGTGGTCACCCAGGAAGACGTGGAGCTGGCCTACCAGGAGG CAATGATGAACATGGCCAGGCTCAACAGGACAGCGGCGGGACTCATGCACACGTTCAATG CCCACGCGGCCACTGACATCACGGGCTTCGGGATCCTGGGCCACGCGCAGAACCTGGCCA AGCAGCAGAGGAACGAGGTGTCCTTCGTGATTCACAACCTTCCAGTCCTGGCCAAGATGG CAGCTGTGAGCAAGGCCTGCGGGAACATGTTCGGCCTCATGCACGGGACCTGCCCGGAGA CGTCAGGGGGCCTTCTAATCTGTTTACCGCGAGAGCAAGCCGCTCGGTTCTGCGCAGAGA TCAAGTCCCCCAAATATGGTGAAGGTCACCAAGCGTGGATTATTGGGATCGTGGAGAAGG GGAACCGCACAGCCAGGATCATAGACAAACCCCGGATCATCGAGGTCGCGCCACAGGTGG CCACCCAGAATGTGAACCCCACACCGGGCGCCACCTCTTAATCTCGGCCGGGTCCACGTG TGGTTTTGGTTTTAAATAGCTCTATTTCCTTTATCATTTCAATTAAAGACTATAAACAAC AACGAAAAAAATCTCATTGTGTCTACACATCTGGTGACCTTAGGTCGATTTGTGAGTGGA TGCAATTAATAAAATAAAATCCAT |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
198-1464, - strand, RNAz p=0.956053 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
198-1464, - strand, RNAz p=0.956053 |
Aligned organism(s): 107 entry(ies) | More info |
Aligned organism(s): 107 entry(ies) | Help | Less info |
3-439, gnl|bosTau2|chr24 (29408711-29409144) | |
3-439, gnl|Hg17|chrX (72771983-72772420) | |
45-319, gnl|bosTau2|chr13 (15318584-15318858) | |
45-319, gnl|canFam2|chr2 (25986941-25986735) | |
45-319, gnl|danRer3|chr18 (6868189-6868395) | |
45-319, gnl|dasNov1|scaffold_53870 (2314-2505) | |
45-319, gnl|echTel1|scaffold_154944 (1979-2185) | |
45-319, gnl|fr1|chrUn (73511728-73512017) | |
45-319, gnl|galGal2|chrUn (162475309-162475512) | |
45-319, gnl|hg17|chr10 (13426755-13426961) | |
45-319, gnl|Hg17|chr10 (13427035-13426760) | |
45-319, gnl|loxAfr1|scaffold_29862 (724-930) | |
45-319, gnl|mm7|chr2 (4801888-4801682) | |
45-319, gnl|Mm7|chr2 (4801603-4801881) | |
45-319, gnl|monDom2|scaffold_30 (12338071-12338277) | |
45-319, gnl|oryCun1|scaffold_156695 (11872-12078) | |
45-319, gnl|panTro1|chr8 (13817790-13817996) | |
45-319, gnl|rheMac2|chr9 (13608767-13608973) | |
45-319, gnl|rn3|chr17 (84479234-84479440) | |
45-319, gnl|tetNig1|chr13 (4124770-4125064) | |
45-319, gnl|xenTro1|scaffold_200 (450026-450206) | |
527-683, gnl|bosTau2|chr13 (15327621-15327777) | |
527-683, gnl|canFam2|chr2 (25996608-25996454) | |
527-683, gnl|canFam2|chr2 (25996608-25996452) | |
527-683, gnl|canFam2|chr2 (25996623-25996451) | |
527-683, gnl|canFam2|chr2 (25996608-25996454) | |
527-683, gnl|canFam2|chr2 (25996452-25996607) | |
527-683, gnl|danRer3|chr18 (6864235-6864397) | |
527-683, gnl|danRer3|chr18 (6864241-6864389) | |
527-683, gnl|danRer3|chr18 (6864389-6864241) | |
527-683, gnl|danRer3|chr21 (32151386-32151535) | |
527-683, gnl|danRer3|chr21 (32151386-32151542) | |
527-683, gnl|dasNov1|scaffold_31224 (7082-7219) | |
527-683, gnl|dasNov1|scaffold_53847 (4231-4088) | |
527-683, gnl|dasNov1|scaffold_53847 (4233-4088) | |
527-683, gnl|dasNov1|scaffold_53847 (4086-4232) | |
527-683, gnl|dasNov1|scaffold_53870 (1982-2130) | |
527-683, gnl|echTel1|scaffold_205217 (1330-1482) | |
527-683, gnl|echTel1|scaffold_205217 (1330-1482) | |
527-683, gnl|echTel1|scaffold_205217 (1484-1331) | |
527-683, gnl|echTel1|scaffold_284257 (47531-47687) | |
527-683, gnl|echTel1|scaffold_284257 (47515-47688) | |
527-683, gnl|fr1|chrUn (73510895-73511049) | |
527-683, gnl|fr1|chrUn (73510895-73511051) | |
527-683, gnl|fr1|chrUn (73510879-73511052) | |
527-683, gnl|fr1|chrUn (73510896-73511049) | |
527-683, gnl|fr1|chrUn (73511049-73510896) | |
527-683, gnl|galGal2|chrUn (162467576-162467730) | |
527-683, gnl|galGal2|chrUn (162467576-162467732) | |
527-683, gnl|galGal2|chrUn (162467568-162467733) | |
527-683, gnl|galGal2|chrUn (162467576-162467730) | |
527-683, gnl|galGal2|chrUn (162467731-162467577) | |
527-683, gnl|hg17|chr10 (13415807-13415980) | |
527-683, gnl|Hg17|chr10 (13415978-13415822) | |
527-683, gnl|hg17|chr15 (91774891-91775045) | |
527-683, gnl|hg17|chr2 (114734477-114734628) | |
527-683, gnl|hg17|chr7 (63757328-63757482) | |
527-683, gnl|hg17|chrX (72772509-72772664) | |
527-683, gnl|loxAfr1|scaffold_24028 (61281-61125) | |
527-683, gnl|loxAfr1|scaffold_24028 (61297-61124) | |
527-683, gnl|loxAfr1|scaffold_24028 (61281-61127) | |
527-683, gnl|loxAfr1|scaffold_24028 (61125-61280) | |
527-683, gnl|loxAfr1|scaffold_55423 (6178-6024) | |
527-683, gnl|mm7|chr2 (4810613-4810459) | |
527-683, gnl|mm7|chr2 (4810612-4810457) | |
527-683, gnl|mm7|chr2 (4810629-4810456) | |
527-683, gnl|mm7|chr2 (4810612-4810459) | |
527-683, gnl|mm7|chr2 (4810457-4810612) | |
527-683, gnl|Mm7|chr2 (4810456-4810612) | |
527-683, gnl|monDom2|scaffold_30 (12322985-12323139) | |
527-683, gnl|monDom2|scaffold_30 (12322985-12323141) | |
527-683, gnl|monDom2|scaffold_30 (12322969-12323142) | |
527-683, gnl|monDom2|scaffold_30 (12322985-12323139) | |
527-683, gnl|monDom2|scaffold_30 (12323141-12322986) | |
527-683, gnl|oryCun1|scaffold_156695 (1017-1171) | |
527-683, gnl|oryCun1|scaffold_156695 (1018-1173) | |
527-683, gnl|oryCun1|scaffold_156695 (1001-1174) | |
527-683, gnl|oryCun1|scaffold_156695 (1018-1171) | |
527-683, gnl|oryCun1|scaffold_156695 (1173-1018) | |
527-683, gnl|panTro1|chr13 (729801-729952) | |
527-683, gnl|panTro1|chr13_random (24622785-24622939) | |
527-683, gnl|panTro1|chr16 (92752464-92752601) | |
527-683, gnl|panTro1|chrX (75184592-75184438) | |
527-683, gnl|panTro1|chrX (75209537-75209692) | |
527-683, gnl|rheMac2|chr13 (120413403-120413554) | |
527-683, gnl|rheMac2|chr3 (60593918-60593764) | |
527-683, gnl|rheMac2|chr7 (73281425-73281579) | |
527-683, gnl|rheMac2|chr9 (13597768-13597941) | |
527-683, gnl|rheMac2|chrX (153010930-153010775) | |
527-683, gnl|rn3|chr1 (242957721-242957876) | |
527-683, gnl|rn3|chr1 (242957721-242957876) | |
527-683, gnl|rn3|chr17 (84471344-84471517) | |
527-683, gnl|rn3|chr17 (84471361-84471514) | |
527-683, gnl|rn3|chr17 (84471516-84471361) | |
527-683, gnl|tetNig1|chr13 (4123960-4124114) | |
527-683, gnl|tetNig1|chr13 (4123960-4124116) | |
527-683, gnl|tetNig1|chr13 (4123956-4124117) | |
527-683, gnl|tetNig1|chr13 (4123961-4124114) | |
527-683, gnl|tetNig1|chr13 (4124114-4123961) | |
527-683, gnl|xenTro1|scaffold_200 (442553-442707) | |
527-683, gnl|xenTro1|scaffold_200 (442553-442709) | |
527-683, gnl|xenTro1|scaffold_200 (442537-442710) | |
527-683, gnl|xenTro1|scaffold_200 (442553-442707) | |
527-683, gnl|xenTro1|scaffold_200 (442709-442554) | |
1084-1464, gnl|bosTau2|chr13 (15340261-15340643) | |
1084-1464, gnl|Hg17|chr10 (13401365-13400989) | |
1084-1464, gnl|Mm7|chr2 (4823850-4824225) |
Aligned organism(s): 107 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
3-439, gnl|bosTau2|chr24 (29408711-29409144) | |
3-439, gnl|Hg17|chrX (72771983-72772420) | |
45-319, gnl|bosTau2|chr13 (15318584-15318858) | |
45-319, gnl|canFam2|chr2 (25986941-25986735) | |
45-319, gnl|danRer3|chr18 (6868189-6868395) | |
45-319, gnl|dasNov1|scaffold_53870 (2314-2505) | |
45-319, gnl|echTel1|scaffold_154944 (1979-2185) | |
45-319, gnl|fr1|chrUn (73511728-73512017) | |
45-319, gnl|galGal2|chrUn (162475309-162475512) | |
45-319, gnl|hg17|chr10 (13426755-13426961) | |
45-319, gnl|Hg17|chr10 (13427035-13426760) | |
45-319, gnl|loxAfr1|scaffold_29862 (724-930) | |
45-319, gnl|mm7|chr2 (4801888-4801682) | |
45-319, gnl|Mm7|chr2 (4801603-4801881) | |
45-319, gnl|monDom2|scaffold_30 (12338071-12338277) | |
45-319, gnl|oryCun1|scaffold_156695 (11872-12078) | |
45-319, gnl|panTro1|chr8 (13817790-13817996) | |
45-319, gnl|rheMac2|chr9 (13608767-13608973) | |
45-319, gnl|rn3|chr17 (84479234-84479440) | |
45-319, gnl|tetNig1|chr13 (4124770-4125064) | |
45-319, gnl|xenTro1|scaffold_200 (450026-450206) | |
527-683, gnl|bosTau2|chr13 (15327621-15327777) | |
527-683, gnl|canFam2|chr2 (25996608-25996454) | |
527-683, gnl|canFam2|chr2 (25996608-25996452) | |
527-683, gnl|canFam2|chr2 (25996623-25996451) | |
527-683, gnl|canFam2|chr2 (25996608-25996454) | |
527-683, gnl|canFam2|chr2 (25996452-25996607) | |
527-683, gnl|danRer3|chr18 (6864235-6864397) | |
527-683, gnl|danRer3|chr18 (6864241-6864389) | |
527-683, gnl|danRer3|chr18 (6864389-6864241) | |
527-683, gnl|danRer3|chr21 (32151386-32151535) | |
527-683, gnl|danRer3|chr21 (32151386-32151542) | |
527-683, gnl|dasNov1|scaffold_31224 (7082-7219) | |
527-683, gnl|dasNov1|scaffold_53847 (4231-4088) | |
527-683, gnl|dasNov1|scaffold_53847 (4233-4088) | |
527-683, gnl|dasNov1|scaffold_53847 (4086-4232) | |
527-683, gnl|dasNov1|scaffold_53870 (1982-2130) | |
527-683, gnl|echTel1|scaffold_205217 (1330-1482) | |
527-683, gnl|echTel1|scaffold_205217 (1330-1482) | |
527-683, gnl|echTel1|scaffold_205217 (1484-1331) | |
527-683, gnl|echTel1|scaffold_284257 (47531-47687) | |
527-683, gnl|echTel1|scaffold_284257 (47515-47688) | |
527-683, gnl|fr1|chrUn (73510895-73511049) | |
527-683, gnl|fr1|chrUn (73510895-73511051) | |
527-683, gnl|fr1|chrUn (73510879-73511052) | |
527-683, gnl|fr1|chrUn (73510896-73511049) | |
527-683, gnl|fr1|chrUn (73511049-73510896) | |
527-683, gnl|galGal2|chrUn (162467576-162467730) | |
527-683, gnl|galGal2|chrUn (162467576-162467732) | |
527-683, gnl|galGal2|chrUn (162467568-162467733) | |
527-683, gnl|galGal2|chrUn (162467576-162467730) | |
527-683, gnl|galGal2|chrUn (162467731-162467577) | |
527-683, gnl|hg17|chr10 (13415807-13415980) | |
527-683, gnl|Hg17|chr10 (13415978-13415822) | |
527-683, gnl|hg17|chr15 (91774891-91775045) | |
527-683, gnl|hg17|chr2 (114734477-114734628) | |
527-683, gnl|hg17|chr7 (63757328-63757482) | |
527-683, gnl|hg17|chrX (72772509-72772664) | |
527-683, gnl|loxAfr1|scaffold_24028 (61281-61125) | |
527-683, gnl|loxAfr1|scaffold_24028 (61297-61124) | |
527-683, gnl|loxAfr1|scaffold_24028 (61281-61127) | |
527-683, gnl|loxAfr1|scaffold_24028 (61125-61280) | |
527-683, gnl|loxAfr1|scaffold_55423 (6178-6024) | |
527-683, gnl|mm7|chr2 (4810613-4810459) | |
527-683, gnl|mm7|chr2 (4810612-4810457) | |
527-683, gnl|mm7|chr2 (4810629-4810456) | |
527-683, gnl|mm7|chr2 (4810612-4810459) | |
527-683, gnl|mm7|chr2 (4810457-4810612) | |
527-683, gnl|Mm7|chr2 (4810456-4810612) | |
527-683, gnl|monDom2|scaffold_30 (12322985-12323139) | |
527-683, gnl|monDom2|scaffold_30 (12322985-12323141) | |
527-683, gnl|monDom2|scaffold_30 (12322969-12323142) | |
527-683, gnl|monDom2|scaffold_30 (12322985-12323139) | |
527-683, gnl|monDom2|scaffold_30 (12323141-12322986) | |
527-683, gnl|oryCun1|scaffold_156695 (1017-1171) | |
527-683, gnl|oryCun1|scaffold_156695 (1018-1173) | |
527-683, gnl|oryCun1|scaffold_156695 (1001-1174) | |
527-683, gnl|oryCun1|scaffold_156695 (1018-1171) | |
527-683, gnl|oryCun1|scaffold_156695 (1173-1018) | |
527-683, gnl|panTro1|chr13 (729801-729952) | |
527-683, gnl|panTro1|chr13_random (24622785-24622939) | |
527-683, gnl|panTro1|chr16 (92752464-92752601) | |
527-683, gnl|panTro1|chrX (75184592-75184438) | |
527-683, gnl|panTro1|chrX (75209537-75209692) | |
527-683, gnl|rheMac2|chr13 (120413403-120413554) | |
527-683, gnl|rheMac2|chr3 (60593918-60593764) | |
527-683, gnl|rheMac2|chr7 (73281425-73281579) | |
527-683, gnl|rheMac2|chr9 (13597768-13597941) | |
527-683, gnl|rheMac2|chrX (153010930-153010775) | |
527-683, gnl|rn3|chr1 (242957721-242957876) | |
527-683, gnl|rn3|chr1 (242957721-242957876) | |
527-683, gnl|rn3|chr17 (84471344-84471517) | |
527-683, gnl|rn3|chr17 (84471361-84471514) | |
527-683, gnl|rn3|chr17 (84471516-84471361) | |
527-683, gnl|tetNig1|chr13 (4123960-4124114) | |
527-683, gnl|tetNig1|chr13 (4123960-4124116) | |
527-683, gnl|tetNig1|chr13 (4123956-4124117) | |
527-683, gnl|tetNig1|chr13 (4123961-4124114) | |
527-683, gnl|tetNig1|chr13 (4124114-4123961) | |
527-683, gnl|xenTro1|scaffold_200 (442553-442707) | |
527-683, gnl|xenTro1|scaffold_200 (442553-442709) | |
527-683, gnl|xenTro1|scaffold_200 (442537-442710) | |
527-683, gnl|xenTro1|scaffold_200 (442553-442707) | |
527-683, gnl|xenTro1|scaffold_200 (442709-442554) | |
1084-1464, gnl|bosTau2|chr13 (15340261-15340643) | |
1084-1464, gnl|Hg17|chr10 (13401365-13400989) | |
1084-1464, gnl|Mm7|chr2 (4823850-4824225) |
Expressed library(ies): 8 entry(ies) | More info |
Expressed library(ies): 8 entry(ies) | Help | Less info |
eru (0.240096) | |
nco (0.161734) | |
che (0.136314) | |
clu (0.119646) | |
pgl (0.118483) | |
med (0.116252) | |
nbm (0.0993246) | |
eje (0.0988338) |
Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
eru (0.240096) | |
nco (0.161734) | |
che (0.136314) | |
clu (0.119646) | |
pgl (0.118483) | |
med (0.116252) | |
nbm (0.0993246) | |
eje (0.0988338) |