Non-Coding RNA Search

Ss1.1-Pig3-SRG8023E11.3

Sequence:


               
               AGAGAGACACCCCTGGCTGGGGAATAGATGACGGGGGAAAGGTATCGTCTCTGCCACCGC
CTGGCACCAGCCGGCCAACGCCCAGCCGCAGACCCGAGCGCGAAGGCGGCTGAAAACTTC
AGCTTCACCTACCTGCCCCTTTCTCTCAGTCCCAAGCTGTTTCCTTTCAGAGTTCTGGGA
GGACGAGCTCGCAAAGGCGAGAAATGTAACATTCCCTCCACCCAGCCTATAAAAGGATTC
TTCCCTGTGCCAGCACGGAGTTTGCATCCAAAGAAACTGGCTGCTGCCGGGAGTTTGGCC
CCCGGGTGGCCGTCCCTGTGGGAGATACATCCTTTTCCTTGGCCCCCTCATTCCCTTTCC
GGAAAAAAAGGAAAACTTCTATTTGAGCCATTGAGCTAATTCTGGAATTTCCTACCAAGC
GCAGCGCTGGTGGCCCCCCGGAGCAGGGCTATTACATGGGCTGGTGGAGCCCCCTTCCTG
TGTTCTCCCTTTGTTCCGGCTCCGCGATGGTGAGATCACTGTTAAGAGCTGGGAAACCGC
TCCCGATAGGACAAAGGGAGCAGGACCTACAGAATGGGGGGAGTCCTGCAGACGATGACA
ATTTGTACCTTGCAGCTCGTCATTTTGGCCTGAAGGCTACAAAGGCGGCACCGACTGAAT
GCACTGAGTCAAATAATTAATTTCTTCTTCCTCCCCCTACCCAACCGTCCAAAATTTTGA
CAATGATGATGTTCACCAGAAAAAAAAAATGAGTTTCATGCACTTTACTTTGTTTTTATT
TTAATTTTTTATTAAGAAAAACTTTTTTATTTGACAGAATTTGCCTTCTATGTATATATG
TGCATAAAGTGTGGTGTAAATATACTAAACAAACTTATATTTCAATAAAAGGCAGTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGAGACACCCCTGGCTGGGGAATAGATGACGGGGGAAAGGTATCGTCTCTGCCACCGC
CTGGCACCAGCCGGCCAACGCCCAGCCGCAGACCCGAGCGCGAAGGCGGCTGAAAACTTC
AGCTTCACCTACCTGCCCCTTTCTCTCAGTCCCAAGCTGTTTCCTTTCAGAGTTCTGGGA
GGACGAGCTCGCAAAGGCGAGAAATGTAACATTCCCTCCACCCAGCCTATAAAAGGATTC
TTCCCTGTGCCAGCACGGAGTTTGCATCCAAAGAAACTGGCTGCTGCCGGGAGTTTGGCC
CCCGGGTGGCCGTCCCTGTGGGAGATACATCCTTTTCCTTGGCCCCCTCATTCCCTTTCC
GGAAAAAAAGGAAAACTTCTATTTGAGCCATTGAGCTAATTCTGGAATTTCCTACCAAGC
GCAGCGCTGGTGGCCCCCCGGAGCAGGGCTATTACATGGGCTGGTGGAGCCCCCTTCCTG
TGTTCTCCCTTTGTTCCGGCTCCGCGATGGTGAGATCACTGTTAAGAGCTGGGAAACCGC
TCCCGATAGGACAAAGGGAGCAGGACCTACAGAATGGGGGGAGTCCTGCAGACGATGACA
ATTTGTACCTTGCAGCTCGTCATTTTGGCCTGAAGGCTACAAAGGCGGCACCGACTGAAT
GCACTGAGTCAAATAATTAATTTCTTCTTCCTCCCCCTACCCAACCGTCCAAAATTTTGA
CAATGATGATGTTCACCAGAAAAAAAAAATGAGTTTCATGCACTTTACTTTGTTTTTATT
TTAATTTTTTATTAAGAAAAACTTTTTTATTTGACAGAATTTGCCTTCTATGTATATATG
TGCATAAAGTGTGGTGTAAATATACTAAACAAACTTATATTTCAATAAAAGGCAGTTTAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-217, gnl|bosTau2|chr15 (39512360-39512141)
               

               
               1-217, gnl|Hg17|chr11 (35598095-35598328)
               

               
               1-217, gnl|Mm7|chr2 (102300969-102300734)
               


               
               219-900, gnl|bosTau2|chr15 (39512168-39511467)
               

               
               219-900, gnl|Hg17|chr11 (35598301-35598983)
               

               
               219-900, gnl|Mm7|chr2 (102300757-102300096)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-217, gnl|bosTau2|chr15 (39512360-39512141)
               

               
               1-217, gnl|Hg17|chr11 (35598095-35598328)
               

               
               1-217, gnl|Mm7|chr2 (102300969-102300734)
               


               
               219-900, gnl|bosTau2|chr15 (39512168-39511467)
               

               
               219-900, gnl|Hg17|chr11 (35598301-35598983)
               

               
               219-900, gnl|Mm7|chr2 (102300757-102300096)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               rec (0.17307)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

	1-217, gnl\|bosTau2\|chr15 (39512360-39512141)
	1-217, gnl\|Hg17\|chr11 (35598095-35598328)
	1-217, gnl\|Mm7\|chr2 (102300969-102300734)

	219-900, gnl\|bosTau2\|chr15 (39512168-39511467)
	219-900, gnl\|Hg17\|chr11 (35598301-35598983)
	219-900, gnl\|Mm7\|chr2 (102300757-102300096)