Non-Coding RNA Search

Ss1.1-Pig3-SRG8023H11.3

Sequence:


               
               GAGAGGAAGGAAAAGGACCAGGCTCAAGGGAAAACCAGAGATGGACCACCGTGGAATGTT
GGGAGAGACTGGCCTCTCAGCTGAGAAATGCATTCTCATCCATGAAGAATAAACTGGACC
TGTTCTTAAGAGGCAGTCTTTGTTTCTCAGCGACAGACACACATTTAAGACGCCATGGGA
AACCAACTATGTAATAATAAAAATATGAAAAGGCGATATGCTCAGAGGAAGTGAAGAGAA
AACAATATGCATCGGGGGACCAAGAGTGAACTCAGCTTGCACCCTCAGCGGGCTGGAGTC
ATGCACCGACAGGAAGAAAGGAAAGGAGGTAAAGGGAAGAAACAGAGGCAGTTTCCCATT
TTCTTCCTCACCAATGACGTTCTTTTCTTTTCTCCTTCTGTCCTCCTCCCCAAGAGTCCG
CTCCCTTCTCCCACATCCATTTCCCTTTGCTCATGACTCGTGTAGGGAAGTTTCTTCAAA
CAAACCCCAGCTCCTGCGTCTCCAGATGTTCTGTCAGTTGCCAAAGGACTTTGCTGACCA
CTGCATGGGGGATCCAACCAATTCAATTAATGTCTTCATATTGAAGAAGAGATGTACCTT
CAATTGAAAACCTTGTTTTTCTTTTGTTTGCATTTTCTGCAAAAAGGAGAAAGAAACCAC
AAAGTGGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGGAAGGAAAAGGACCAGGCTCAAGGGAAAACCAGAGATGGACCACCGTGGAATGTT
GGGAGAGACTGGCCTCTCAGCTGAGAAATGCATTCTCATCCATGAAGAATAAACTGGACC
TGTTCTTAAGAGGCAGTCTTTGTTTCTCAGCGACAGACACACATTTAAGACGCCATGGGA
AACCAACTATGTAATAATAAAAATATGAAAAGGCGATATGCTCAGAGGAAGTGAAGAGAA
AACAATATGCATCGGGGGACCAAGAGTGAACTCAGCTTGCACCCTCAGCGGGCTGGAGTC
ATGCACCGACAGGAAGAAAGGAAAGGAGGTAAAGGGAAGAAACAGAGGCAGTTTCCCATT
TTCTTCCTCACCAATGACGTTCTTTTCTTTTCTCCTTCTGTCCTCCTCCCCAAGAGTCCG
CTCCCTTCTCCCACATCCATTTCCCTTTGCTCATGACTCGTGTAGGGAAGTTTCTTCAAA
CAAACCCCAGCTCCTGCGTCTCCAGATGTTCTGTCAGTTGCCAAAGGACTTTGCTGACCA
CTGCATGGGGGATCCAACCAATTCAATTAATGTCTTCATATTGAAGAAGAGATGTACCTT
CAATTGAAAACCTTGTTTTTCTTTTGTTTGCATTTTCTGCAAAAAGGAGAAAGAAACCAC
AAAGTGGTAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-432, - strand, RNAz p=0.999211
               

               
               547-667, + strand, RNAz p=0.842044

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-432, - strand, RNAz p=0.999211
               

               
               547-667, + strand, RNAz p=0.842044

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               313-402, + strand, RNAmicro p=0.997634

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               313-402, + strand, RNAmicro p=0.997634

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               79-432, AU132509 NT2RP3 Homo sapiens cDNA clone NT2RP3004627 5', mRNA 
(dbj|AU132509.1|), blast E-value=0, identity=82.49% 
               

               
               79-432, DKFZp434J1272_r1 434 (synonym (emb|AL046095.2|), blast E-value=0, 
identity=82.49% 
               

               
               177-432, tt06d05.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb|AI638035.1|), 
blast E-value=0, identity=85.16% 
               

               
               176-432, wl80c05.x1 NCI_CGAP_Brn25 Homo sapiens cDNA clone IMAGE 
(gb|AI871233.1|), blast E-value=0, identity=84.82% 
               

               
               143-432, 7a22c12.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb|BE550340.1|), 
blast E-value=0, identity=84.14% 
               

               
               81-426, 1615993 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|EB726934.1|), 
blast E-value=0, identity=83.29%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               79-432, AU132509 NT2RP3 Homo sapiens cDNA clone NT2RP3004627 5', mRNA 
(dbj|AU132509.1|), blast E-value=0, identity=82.49% 
               

               
               79-432, DKFZp434J1272_r1 434 (synonym (emb|AL046095.2|), blast E-value=0, 
identity=82.49% 
               

               
               177-432, tt06d05.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb|AI638035.1|), 
blast E-value=0, identity=85.16% 
               

               
               176-432, wl80c05.x1 NCI_CGAP_Brn25 Homo sapiens cDNA clone IMAGE 
(gb|AI871233.1|), blast E-value=0, identity=84.82% 
               

               
               143-432, 7a22c12.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb|BE550340.1|), 
blast E-value=0, identity=84.14% 
               

               
               81-426, 1615993 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|EB726934.1|), 
blast E-value=0, identity=83.29%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004441, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004441, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-667, gnl|bosTau2|chr3 (11322540-11321876)
               

               
               1-667, gnl|Hg17|chr3 (136460683-136461349)
               

               
               1-667, gnl|Mm7|chr9 (101613368-101612693)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-667, gnl|bosTau2|chr3 (11322540-11321876)
               

               
               1-667, gnl|Hg17|chr3 (136460683-136461349)
               

               
               1-667, gnl|Mm7|chr9 (101613368-101612693)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               fbs (0.175346)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fbs (0.175346)

	79-432, - strand, RNAz p=0.999211
	547-667, + strand, RNAz p=0.842044

	79-432, AU132509 NT2RP3 Homo sapiens cDNA clone NT2RP3004627 5', mRNA (dbj\|AU132509.1\|), blast E-value=0, identity=82.49%
	79-432, DKFZp434J1272_r1 434 (synonym (emb\|AL046095.2\|), blast E-value=0, identity=82.49%
	177-432, tt06d05.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb\|AI638035.1\|), blast E-value=0, identity=85.16%
	176-432, wl80c05.x1 NCI_CGAP_Brn25 Homo sapiens cDNA clone IMAGE (gb\|AI871233.1\|), blast E-value=0, identity=84.82%
	143-432, 7a22c12.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb\|BE550340.1\|), blast E-value=0, identity=84.14%
	81-426, 1615993 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|EB726934.1\|), blast E-value=0, identity=83.29%

	1-667, gnl\|bosTau2\|chr3 (11322540-11321876)
	1-667, gnl\|Hg17\|chr3 (136460683-136461349)
	1-667, gnl\|Mm7\|chr9 (101613368-101612693)