Non-Coding RNA Search

Ss1.1-Pig3-SRG8023H15.5

Sequence:


               
               TCACCTCCCTCTTCAGGTAAGTCTCATGAATGCAACCTGGGGCCGAAGGAATTAAGATAA
CACAGCAGTATCAACGTTTTAGATAGATTTTTTTATTTAAGCAATTTTTAAAAAGATACC
AAATTCAGACTGACTCTTCAGAGATAACATTTCGGAATCAGACCCATCCAAAAGGTCACC
TAAGGTGAGGCTAAGAACTGTGCTTCCCCTGGTGGGGGGCGAGCTGGCTGACACCTCCAG
ACCGTGCCTTGGTGTCAGCTAGAAGCGCCAGCGGCCCAGGTGATCACCACTCTGACAGGC
GGGCGTGCACCCCAGGGACTCAAAACTCTCACTGCCCAGAAAACAGACTGTGAAGGTCCC
CCAGGCCACAAACACTGGGGAGAAAGGAGCCGCGGGAAGCTTCTGATCTGCTCGCTGCAG
ACATCCCTTCCTGACTCTGTTACAGACCCCTGGCTTTGACGCTGAAAGGAGCGTCCTCAG
CACACCTGAGTCTGGGAGAACAAATGCTCAGTCGTGTGGCCTTTGACTTCGCAGAGCTGT
AGCTTTGAGCACTGCTGTTCTGCCACTGCTTACTCTTTAAAATCTGCCATTAAAGAGAGA
TGCTGACATCAACAGGGCTCATCCTTTGAACGCTTAGTTGTAAGCAGATCTTTGGTCAGA
GTCAGGGAGTGAGCCACGGTTGTAAATGTGAATGATACCTGTGCAAAGTCTCTGAACCTG
ACTTAAAGCTGACTTGGTCATTTTGTAAATTATCAGGCATTAAGTAGCAGCCAAATAATC
TTATTTCCAGTTTTAACTTATTTACAGAGTTACTTTTCTTTGCAAAAATCTAAGTTAAAC
TAGTCCTTTATGCCGACAAACTGCTGATTTATGTATTTGCTAAGGTACCTTTTGTACCTG
CTGTGTATTATAGCAATAAAATAATCATTTTGTTAGGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACCTCCCTCTTCAGGTAAGTCTCATGAATGCAACCTGGGGCCGAAGGAATTAAGATAA
CACAGCAGTATCAACGTTTTAGATAGATTTTTTTATTTAAGCAATTTTTAAAAAGATACC
AAATTCAGACTGACTCTTCAGAGATAACATTTCGGAATCAGACCCATCCAAAAGGTCACC
TAAGGTGAGGCTAAGAACTGTGCTTCCCCTGGTGGGGGGCGAGCTGGCTGACACCTCCAG
ACCGTGCCTTGGTGTCAGCTAGAAGCGCCAGCGGCCCAGGTGATCACCACTCTGACAGGC
GGGCGTGCACCCCAGGGACTCAAAACTCTCACTGCCCAGAAAACAGACTGTGAAGGTCCC
CCAGGCCACAAACACTGGGGAGAAAGGAGCCGCGGGAAGCTTCTGATCTGCTCGCTGCAG
ACATCCCTTCCTGACTCTGTTACAGACCCCTGGCTTTGACGCTGAAAGGAGCGTCCTCAG
CACACCTGAGTCTGGGAGAACAAATGCTCAGTCGTGTGGCCTTTGACTTCGCAGAGCTGT
AGCTTTGAGCACTGCTGTTCTGCCACTGCTTACTCTTTAAAATCTGCCATTAAAGAGAGA
TGCTGACATCAACAGGGCTCATCCTTTGAACGCTTAGTTGTAAGCAGATCTTTGGTCAGA
GTCAGGGAGTGAGCCACGGTTGTAAATGTGAATGATACCTGTGCAAAGTCTCTGAACCTG
ACTTAAAGCTGACTTGGTCATTTTGTAAATTATCAGGCATTAAGTAGCAGCCAAATAATC
TTATTTCCAGTTTTAACTTATTTACAGAGTTACTTTTCTTTGCAAAAATCTAAGTTAAAC
TAGTCCTTTATGCCGACAAACTGCTGATTTATGTATTTGCTAAGGTACCTTTTGTACCTG
CTGTGTATTATAGCAATAAAATAATCATTTTGTTAGGAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               4-942, gnl|bosTau2|chr17 (35262749-35263669)
               

               
               4-942, gnl|Hg17|chr12 (107987645-107988547)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-942, gnl|bosTau2|chr17 (35262749-35263669)
               

               
               4-942, gnl|Hg17|chr12 (107987645-107988547)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               pgl (0.35545)
               

               
               nep (0.183925)
               

               
               bfe (0.149858)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.35545)
               

               
               nep (0.183925)
               

               
               bfe (0.149858)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	4-942, gnl\|bosTau2\|chr17 (35262749-35263669)
	4-942, gnl\|Hg17\|chr12 (107987645-107988547)

	pgl (0.35545)
	nep (0.183925)
	bfe (0.149858)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)