Non-Coding RNA Search

Ss1.1-Pig3-SRG8023I21.3

Sequence:


               
               GAAGCTGAGTGGAAAGGAAGAAGAAAATGGAGAAGGGGGATACTCTGTATTGGAGAAGAC
TGCATACCGGGCAAGGCCCTGGCCGAGCTGCTGTGACTCCCTGACCCAAGGGGCCTGGTG
TCCCTCTGAGGCCTAGTGATCAAGCTGGAGGGGGGACAGCCTCCATCTCTGAACTTGGAG
GATCCTATCTCATCCCCAAGCACTGAGCTGGGTTCTTGCCCGACTCTCTCCTTCCCTGAA
GGAGAAAACGGGAACGAAAAGCAGAATGGCTCCCCAGCATCTTCTCGCTCTTTCTTTCCT
CAACAGCCAGCCCCTCGTCCAACCCCCCTGGGAGCATGCCATGTGAAGAGCAATGTGTAA
AGGAAAGAAAATGTCCAATGTGGCCATGCATCCCTACCCACTGACCTCTCCCACCTTTCT
CTCTTCCCCTAAAAGTTAATTGGGTTAGTCTCACTTGTGGCCTTTGATTAAATTTCTAAG
GGGCCTGGAGAAGACATTTCTACTGCAGAGGGTTAGAGGCACCTGAGCAAGGGCCCCACT
CCCTCTGGCAGTAGTGGCCGGGGGGGAGCGGGGAGGCAGTTCTGGAGAACGATCCAGACA
AGACAGTAGGAACTCACAGGGCAGCAGGAGCTGTTTAATAGCCTCTAAGTGGGTTCCATC
CCTTCCCCACATCAGATCAGAATCTTGTGAACCGGGAAAACAGCAGAAGGAGGGGATCAA
AGGAAACCAATCTCTCATACTTTGCAGGCATCGCAGAGGTGGGAGTCAAACCCGGGTGAG
AGATGGGTGGAGAGCCCTGTTTGAGGTTGTGGCCGATCCCTGGTAGTAGCTTTTCCCCTG
GGAGCAGGAAGCCCCAGGAAGAGGGGACTGCAGGGTCCCCAGGGGATCCTTTCTCCCTCC
CCTGCATGAGGCAGAGGCAAGCTGCCTGCCAACCCCTCCCTCAAGGAATGGCCTTGCCTG
GGAATGCCCACCACACACAACCTCCTCTTTTTTTCTAGTCAAACTCTGTTTACTCCTTGG
CCTGCCTCCCTCCTTCCTCCCCTCTCAACCTTTACTTCTGATTTCTATTTCATGGAATTT
GGGATTGAAATTAAACTACAACAGTGCCGCCAACATCAAGTCTTGCAGGAAAAAAAAATA
CAAAGAAATTTAACAAAAAAAATATATTAATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCTGAGTGGAAAGGAAGAAGAAAATGGAGAAGGGGGATACTCTGTATTGGAGAAGAC
TGCATACCGGGCAAGGCCCTGGCCGAGCTGCTGTGACTCCCTGACCCAAGGGGCCTGGTG
TCCCTCTGAGGCCTAGTGATCAAGCTGGAGGGGGGACAGCCTCCATCTCTGAACTTGGAG
GATCCTATCTCATCCCCAAGCACTGAGCTGGGTTCTTGCCCGACTCTCTCCTTCCCTGAA
GGAGAAAACGGGAACGAAAAGCAGAATGGCTCCCCAGCATCTTCTCGCTCTTTCTTTCCT
CAACAGCCAGCCCCTCGTCCAACCCCCCTGGGAGCATGCCATGTGAAGAGCAATGTGTAA
AGGAAAGAAAATGTCCAATGTGGCCATGCATCCCTACCCACTGACCTCTCCCACCTTTCT
CTCTTCCCCTAAAAGTTAATTGGGTTAGTCTCACTTGTGGCCTTTGATTAAATTTCTAAG
GGGCCTGGAGAAGACATTTCTACTGCAGAGGGTTAGAGGCACCTGAGCAAGGGCCCCACT
CCCTCTGGCAGTAGTGGCCGGGGGGGAGCGGGGAGGCAGTTCTGGAGAACGATCCAGACA
AGACAGTAGGAACTCACAGGGCAGCAGGAGCTGTTTAATAGCCTCTAAGTGGGTTCCATC
CCTTCCCCACATCAGATCAGAATCTTGTGAACCGGGAAAACAGCAGAAGGAGGGGATCAA
AGGAAACCAATCTCTCATACTTTGCAGGCATCGCAGAGGTGGGAGTCAAACCCGGGTGAG
AGATGGGTGGAGAGCCCTGTTTGAGGTTGTGGCCGATCCCTGGTAGTAGCTTTTCCCCTG
GGAGCAGGAAGCCCCAGGAAGAGGGGACTGCAGGGTCCCCAGGGGATCCTTTCTCCCTCC
CCTGCATGAGGCAGAGGCAAGCTGCCTGCCAACCCCTCCCTCAAGGAATGGCCTTGCCTG
GGAATGCCCACCACACACAACCTCCTCTTTTTTTCTAGTCAAACTCTGTTTACTCCTTGG
CCTGCCTCCCTCCTTCCTCCCCTCTCAACCTTTACTTCTGATTTCTATTTCATGGAATTT
GGGATTGAAATTAAACTACAACAGTGCCGCCAACATCAAGTCTTGCAGGAAAAAAAAATA
CAAAGAAATTTAACAAAAAAAATATATTAATAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               118-317, - strand, RNAz p=0.988044
               

               
               457-720, - strand, RNAz p=0.896932
               

               
               758-988, + strand, RNAz p=0.985705

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-317, - strand, RNAz p=0.988044
               

               
               457-720, - strand, RNAz p=0.896932
               

               
               758-988, + strand, RNAz p=0.985705

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_032452, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032452, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1176, gnl|bosTau2|chr10 (13611082-13612256)
               

               
               1-1176, gnl|Hg17|chr14 (23108277-23107098)
               

               
               1-1176, gnl|Mm7|chr14 (49974359-49973289)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1176, gnl|bosTau2|chr10 (13611082-13612256)
               

               
               1-1176, gnl|Hg17|chr14 (23108277-23107098)
               

               
               1-1176, gnl|Mm7|chr14 (49974359-49973289)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               ecc (0.46014)
               

               
               fhi (0.339155)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.46014)
               

               
               fhi (0.339155)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)

	118-317, - strand, RNAz p=0.988044
	457-720, - strand, RNAz p=0.896932
	758-988, + strand, RNAz p=0.985705

	1-1176, gnl\|bosTau2\|chr10 (13611082-13612256)
	1-1176, gnl\|Hg17\|chr14 (23108277-23107098)
	1-1176, gnl\|Mm7\|chr14 (49974359-49973289)

	ecc (0.46014)
	fhi (0.339155)
	ebs (0.236602)
	ece (0.229305)
	hyp (0.142837)
	nca (0.136874)