Non-Coding RNA Search

Ss1.1-Pig3-SRG8023K01.3

Sequence:


               
               CGTATCAAAAAGACTTTGACCAAAATTGATAATTCCCTAGACAAATTGAAAACTGACTGT
TGACATTTTCATGGTGTCAAGAAGGAAGATCTGATGTCATCGTTGTCCAGCTGGGACCTA
ATGCTGGCCTGACTGGCAGTCAGAATAGAATCCAGCTGTCTCCCTCCCCAAGTGGCTGCT
TTGACAAGGCAGACATCTTACCCAGCCATGTGCTGGGGAGACACCAAAACCACCCTAACC
TCGCTCAATGACTGTGAACTGGGCATTTCACAAACTGTTCACACTGCAGAGACTAATGTT
GGACAGACACTGTTGCAAAGGTAGGGAACTGGAGGAACACAGAGAAATCCTAAAAGAGAT
CTGGGCATTAAGACAGTGGCTTTGCATATCTTCACAGGTCTCCTAGACACTCCCCATGGG
AAACTCAAGGAGGTGGTGAATTTTTAATCAGCAATATTGCCTGTGCTTCTCTTCTTTATT
GCACTAGGAATTCTTTGCATTCCTTACTTGCACTGTTACTCTTAATTTTAAAGACCCAAC
TTGCCAAAACATTGGCTGCATACTCCACTGGTCTGTCTTTGGATAATAGGAATTCAATTT
GGCAAAACAAAATGTAATGTCAGACTTTGCTGCATTTTACACGTGCTGATGTTTACAATG
ACGCTGAACATTAGGAATTGTTTATACACAACTTTGCAAATTATTTATTACTTGTGCACA
TAGCAGTTTTTACAGAACTGCTTTGTGCATATGTTAAAGCTTATTTTTATGTGGTTCTTA
TGATTTTATTATCAAAATGTTTTTAACACTATACTCTGAAATGGACATTTTCTTTTATTA
TCAGTTAAATTCACATTTTAAGTGCTTCACATTTATAGGTGTGTAGACTGTAAGTTTTTT
TCAGTTCATATGCAGAACGTATTTAGCCATTACCCATGTGACACCACCGAATATATTACT
GATTTAGAAGCAAAGATTTCAGTAGAATTTTAGTCCTGAACGCTGTGGGGAAAAATGCAT
TTTCTTCGGAATTATCCATTATGTGCATTTAAACTCTGCCAGAAAAAAAAAATAACTATT
TTGTTTTAATCTACTTTTTGTATTTAGTAGTTATTTGTATAAATTAAATAAAATGTTTTC
AAGTCAAAGTGAAATTTTTCAACATAAAGATCTACATAATATAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTATCAAAAAGACTTTGACCAAAATTGATAATTCCCTAGACAAATTGAAAACTGACTGT
TGACATTTTCATGGTGTCAAGAAGGAAGATCTGATGTCATCGTTGTCCAGCTGGGACCTA
ATGCTGGCCTGACTGGCAGTCAGAATAGAATCCAGCTGTCTCCCTCCCCAAGTGGCTGCT
TTGACAAGGCAGACATCTTACCCAGCCATGTGCTGGGGAGACACCAAAACCACCCTAACC
TCGCTCAATGACTGTGAACTGGGCATTTCACAAACTGTTCACACTGCAGAGACTAATGTT
GGACAGACACTGTTGCAAAGGTAGGGAACTGGAGGAACACAGAGAAATCCTAAAAGAGAT
CTGGGCATTAAGACAGTGGCTTTGCATATCTTCACAGGTCTCCTAGACACTCCCCATGGG
AAACTCAAGGAGGTGGTGAATTTTTAATCAGCAATATTGCCTGTGCTTCTCTTCTTTATT
GCACTAGGAATTCTTTGCATTCCTTACTTGCACTGTTACTCTTAATTTTAAAGACCCAAC
TTGCCAAAACATTGGCTGCATACTCCACTGGTCTGTCTTTGGATAATAGGAATTCAATTT
GGCAAAACAAAATGTAATGTCAGACTTTGCTGCATTTTACACGTGCTGATGTTTACAATG
ACGCTGAACATTAGGAATTGTTTATACACAACTTTGCAAATTATTTATTACTTGTGCACA
TAGCAGTTTTTACAGAACTGCTTTGTGCATATGTTAAAGCTTATTTTTATGTGGTTCTTA
TGATTTTATTATCAAAATGTTTTTAACACTATACTCTGAAATGGACATTTTCTTTTATTA
TCAGTTAAATTCACATTTTAAGTGCTTCACATTTATAGGTGTGTAGACTGTAAGTTTTTT
TCAGTTCATATGCAGAACGTATTTAGCCATTACCCATGTGACACCACCGAATATATTACT
GATTTAGAAGCAAAGATTTCAGTAGAATTTTAGTCCTGAACGCTGTGGGGAAAAATGCAT
TTTCTTCGGAATTATCCATTATGTGCATTTAAACTCTGCCAGAAAAAAAAAATAACTATT
TTGTTTTAATCTACTTTTTGTATTTAGTAGTTATTTGTATAAATTAAATAAAATGTTTTC
AAGTCAAAGTGAAATTTTTCAACATAAAGATCTACATAATATAAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57110565|ref|XP_549615.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57110565|ref|XP_549615.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               40-230, - strand, RNAz p=0.925221
               

               
               387-585, - strand, RNAz p=0.896661
               

               
               663-822, + strand, RNAz p=0.996718

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-230, - strand, RNAz p=0.925221
               

               
               387-585, - strand, RNAz p=0.896661
               

               
               663-822, + strand, RNAz p=0.996718

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001105, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001105, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1184, gnl|bosTau2|chr2 (11676987-11678172)
               

               
               1-1184, gnl|Hg17|chr2 (158419613-158418420)
               

               
               1-1184, gnl|Mm7|chr2 (58448289-58447068)
               


               
               919-1042, gnl|bosTau2|chr21 (6144643-6144765)
               

               
               919-1042, gnl|Hg17|chr2 (158418691-158418570)
               

               
               919-1042, gnl|Mm7|chr2 (58447353-58447232)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1184, gnl|bosTau2|chr2 (11676987-11678172)
               

               
               1-1184, gnl|Hg17|chr2 (158419613-158418420)
               

               
               1-1184, gnl|Mm7|chr2 (58448289-58447068)
               


               
               919-1042, gnl|bosTau2|chr21 (6144643-6144765)
               

               
               919-1042, gnl|Hg17|chr2 (158418691-158418570)
               

               
               919-1042, gnl|Mm7|chr2 (58447353-58447232)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               liv (0.438853)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	40-230, - strand, RNAz p=0.925221
	387-585, - strand, RNAz p=0.896661
	663-822, + strand, RNAz p=0.996718

	1-1184, gnl\|bosTau2\|chr2 (11676987-11678172)
	1-1184, gnl\|Hg17\|chr2 (158419613-158418420)
	1-1184, gnl\|Mm7\|chr2 (58448289-58447068)

	919-1042, gnl\|bosTau2\|chr21 (6144643-6144765)
	919-1042, gnl\|Hg17\|chr2 (158418691-158418570)
	919-1042, gnl\|Mm7\|chr2 (58447353-58447232)

	liv (0.438853)
	ova (0.258264)
	ret (0.257467)
	pgl (0.236967)
	mgp (0.230681)
	fli (0.202881)
	sin (0.174948)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	pla (0.133672)
	nmm (0.132802)
	kid (0.129735)
	bla (0.124347)
	tra (0.123092)
	jca (0.11396)
	jej (0.0989218)